Cluster: HRGMv2_0719_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: HRGMv2_0719
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0719_34 | HRGMv2_0719_34_6 | 7516 | 8865 | - | 2.A.37.2.2 |
| CAZyme | HRGMv2_0719_34 | HRGMv2_0719_34_7 | 9054 | 10835 | - | GH13_39 |
| CAZyme | HRGMv2_0719_34 | HRGMv2_0719_34_8 | 10836 | 13262 | - | GT35 |
| CAZyme | HRGMv2_0719_34 | HRGMv2_0719_34_9 | 13296 | 15092 | - | GT5 |
| pfam | HRGMv2_0719_34 | HRGMv2_0719_34_10 | 15277 | 16389 | - | NTP_transferase | Bactofilin | Hexapep_GlmU |
| pfam | HRGMv2_0719_34 | HRGMv2_0719_34_11 | 16407 | 17588 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_0719_34 | HRGMv2_0719_34_12 | 17585 | 19450 | - | GH13_9 |
Gene ID: HRGMv2_0719_34_6
Type: TC
Location: 7516 - 8865 (-)
Type: TC
Location: 7516 - 8865 (-)
Gene ID: HRGMv2_0719_34_7
Type: CAZyme
Location: 9054 - 10835 (-)
Type: CAZyme
Location: 9054 - 10835 (-)
Gene ID: HRGMv2_0719_34_8
Type: CAZyme
Location: 10836 - 13262 (-)
Type: CAZyme
Location: 10836 - 13262 (-)
Gene ID: HRGMv2_0719_34_9
Type: CAZyme
Location: 13296 - 15092 (-)
Type: CAZyme
Location: 13296 - 15092 (-)
Gene ID: HRGMv2_0719_34_10
Type: pfam
Location: 15277 - 16389 (-)
Type: pfam
Location: 15277 - 16389 (-)
Gene ID: HRGMv2_0719_34_11
Type: pfam
Location: 16407 - 17588 (-)
Type: pfam
Location: 16407 - 17588 (-)
Gene ID: HRGMv2_0719_34_12
Type: CAZyme
Location: 17585 - 19450 (-)
Type: CAZyme
Location: 17585 - 19450 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_34_6 | vegetarian > omnivore | 3.51359 | 0.02785 |
| HRGMv2_0719_34_6 | vegetarian > vegan | 2.19302 | 0.00565 |
| HRGMv2_0719_34_7 | vegetarian > omnivore | 1.92477 | 0.02785 |
| HRGMv2_0719_34_7 | vegetarian > vegan | 1.42924 | 0.00565 |
| HRGMv2_0719_34_9 | vegetarian > omnivore | 1.32097 | 0.02785 |
| HRGMv2_0719_34_10 | vegetarian > omnivore | 1.57878 | 0.02785 |
| HRGMv2_0719_34_10 | vegetarian > vegan | 2.51431 | 0.00565 |
| HRGMv2_0719_34_11 | vegetarian > vegan | 1.90394 | 0.00565 |
| HRGMv2_0719_34_12 | vegan > omnivore | 1.50325 | 0.02258 |
| HRGMv2_0719_34_12 | vegetarian > omnivore | 1.54656 | 0.02785 |