Cluster: HRGMv2_0719_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0719
- CGC Family ID: CGCFAM_04010
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0719_23 | HRGMv2_0719_23_25 | 23680 | 25209 | + | 3.A.1.11.8 |
| TC | HRGMv2_0719_23 | HRGMv2_0719_23_26 | 25193 | 26008 | + | 3.A.1.11.7 |
| TC | HRGMv2_0719_23 | HRGMv2_0719_23_27 | 26005 | 26826 | + | 3.A.1.11.8 |
| TC | HRGMv2_0719_23 | HRGMv2_0719_23_28 | 26886 | 28103 | + | 3.A.1.11.8 |
| STP | HRGMv2_0719_23 | HRGMv2_0719_23_29 | 28132 | 29985 | + | Pyr_redox_2 |
| pfam | HRGMv2_0719_23 | HRGMv2_0719_23_30 | 30698 | 30979 | + | SpoVG |
| TC | HRGMv2_0719_23 | HRGMv2_0719_23_31 | 31194 | 32600 | + | 2.A.66.1.33 |
| pfam | HRGMv2_0719_23 | HRGMv2_0719_23_32 | 32699 | 33394 | + | Aldolase_II |
| pfam | HRGMv2_0719_23 | HRGMv2_0719_23_33 | 33522 | 33782 | - | SpoIIID |
| CAZyme | HRGMv2_0719_23 | HRGMv2_0719_23_34 | 34011 | 34934 | + | GH43_32 |
Gene ID: HRGMv2_0719_23_25
Type: TC
Location: 23680 - 25209 (+)
Type: TC
Location: 23680 - 25209 (+)
Gene ID: HRGMv2_0719_23_26
Type: TC
Location: 25193 - 26008 (+)
Type: TC
Location: 25193 - 26008 (+)
Gene ID: HRGMv2_0719_23_27
Type: TC
Location: 26005 - 26826 (+)
Type: TC
Location: 26005 - 26826 (+)
Gene ID: HRGMv2_0719_23_28
Type: TC
Location: 26886 - 28103 (+)
Type: TC
Location: 26886 - 28103 (+)
Gene ID: HRGMv2_0719_23_29
Type: STP
Location: 28132 - 29985 (+)
Type: STP
Location: 28132 - 29985 (+)
Gene ID: HRGMv2_0719_23_30
Type: pfam
Location: 30698 - 30979 (+)
Type: pfam
Location: 30698 - 30979 (+)
Gene ID: HRGMv2_0719_23_31
Type: TC
Location: 31194 - 32600 (+)
Type: TC
Location: 31194 - 32600 (+)
Gene ID: HRGMv2_0719_23_32
Type: pfam
Location: 32699 - 33394 (+)
Type: pfam
Location: 32699 - 33394 (+)
Gene ID: HRGMv2_0719_23_33
Type: pfam
Location: 33522 - 33782 (-)
Type: pfam
Location: 33522 - 33782 (-)
Gene ID: HRGMv2_0719_23_34
Type: CAZyme
Location: 34011 - 34934 (+)
Type: CAZyme
Location: 34011 - 34934 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_23_25 | vegetarian > vegan | 1.17607 | 0.00565 |
| HRGMv2_0719_23_26 | vegetarian > omnivore | 2.19228 | 0.02785 |
| HRGMv2_0719_23_26 | vegetarian > vegan | 1.01482 | 0.00565 |
| HRGMv2_0719_23_27 | vegetarian > omnivore | 2.19126 | 0.02785 |
| HRGMv2_0719_23_27 | vegetarian > vegan | 2.18392 | 0.00565 |
| HRGMv2_0719_23_29 | vegetarian > omnivore | 1.32238 | 0.02785 |
| HRGMv2_0719_23_29 | vegetarian > vegan | 1.12956 | 0.00565 |
| HRGMv2_0719_23_30 | vegetarian > omnivore | 1.69270 | 0.02785 |
| HRGMv2_0719_23_30 | vegetarian > vegan | 1.11636 | 0.00565 |
| HRGMv2_0719_23_32 | vegetarian > omnivore | 1.62122 | 0.02785 |
| HRGMv2_0719_23_32 | vegetarian > vegan | 1.92110 | 0.00565 |