Cluster: HRGMv2_0719_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0719
- CGC Family ID: CGCFAM_00987
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0719_15 | HRGMv2_0719_15_23 | 26783 | 27556 | - | CE4 |
| TC | HRGMv2_0719_15 | HRGMv2_0719_15_24 | 27765 | 28643 | - | 3.D.6.1.3 |
| TC | HRGMv2_0719_15 | HRGMv2_0719_15_25 | 28655 | 29239 | - | 3.D.6.1.2 |
| TC | HRGMv2_0719_15 | HRGMv2_0719_15_26 | 29236 | 29844 | - | 3.D.6.1.2 |
| NULL(UNKNOWN) | HRGMv2_0719_15 | HRGMv2_0719_15_27 | 29841 | 30479 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0719_15 | HRGMv2_0719_15_28 | 30481 | 31566 | - | 3.D.6.1.2 |
| TC | HRGMv2_0719_15 | HRGMv2_0719_15_29 | 31566 | 32870 | - | 3.D.6.1.2 |
Gene ID: HRGMv2_0719_15_23
Type: CAZyme
Location: 26783 - 27556 (-)
Type: CAZyme
Location: 26783 - 27556 (-)
Gene ID: HRGMv2_0719_15_24
Type: TC
Location: 27765 - 28643 (-)
Type: TC
Location: 27765 - 28643 (-)
Gene ID: HRGMv2_0719_15_25
Type: TC
Location: 28655 - 29239 (-)
Type: TC
Location: 28655 - 29239 (-)
Gene ID: HRGMv2_0719_15_26
Type: TC
Location: 29236 - 29844 (-)
Type: TC
Location: 29236 - 29844 (-)
Gene ID: HRGMv2_0719_15_27
Type:
Location: 29841 - 30479 (-)
Type:
Location: 29841 - 30479 (-)
Gene ID: HRGMv2_0719_15_28
Type: TC
Location: 30481 - 31566 (-)
Type: TC
Location: 30481 - 31566 (-)
Gene ID: HRGMv2_0719_15_29
Type: TC
Location: 31566 - 32870 (-)
Type: TC
Location: 31566 - 32870 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_15_23 | vegetarian > omnivore | 1.33753 | 0.02785 |
| HRGMv2_0719_15_23 | vegetarian > vegan | 2.13792 | 0.00565 |
| HRGMv2_0719_15_26 | vegetarian > omnivore | 2.09176 | 0.02785 |
| HRGMv2_0719_15_26 | vegetarian > vegan | 2.35382 | 0.00565 |
| HRGMv2_0719_15_29 | vegetarian > omnivore | 3.01611 | 0.02785 |
| HRGMv2_0719_15_29 | vegetarian > vegan | 1.36021 | 0.00565 |