Cluster: HRGMv2_0719_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0719
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0719_11 | HRGMv2_0719_11_20 | 30273 | 31163 | - | 3.A.1.1.41 |
| TC | HRGMv2_0719_11 | HRGMv2_0719_11_21 | 31173 | 32120 | - | 3.A.1.1.4 |
| pfam | HRGMv2_0719_11 | HRGMv2_0719_11_22 | 32150 | 34075 | - | SBP_bac_1 | SBP_bac_8 | SBP_bac_8 |
| CAZyme | HRGMv2_0719_11 | HRGMv2_0719_11_23 | 34072 | 35832 | - | GH2 |
| TF | HRGMv2_0719_11 | HRGMv2_0719_11_24 | 36201 | 37133 | + | 0043095 |
| pfam | HRGMv2_0719_11 | HRGMv2_0719_11_25 | 37543 | 38625 | - | Exo_endo_phos |
| TC | HRGMv2_0719_11 | HRGMv2_0719_11_26 | 38803 | 39627 | - | 1.A.23.2.1 |
Gene ID: HRGMv2_0719_11_20
Type: TC
Location: 30273 - 31163 (-)
Type: TC
Location: 30273 - 31163 (-)
Gene ID: HRGMv2_0719_11_21
Type: TC
Location: 31173 - 32120 (-)
Type: TC
Location: 31173 - 32120 (-)
Gene ID: HRGMv2_0719_11_22
Type: pfam
Location: 32150 - 34075 (-)
Type: pfam
Location: 32150 - 34075 (-)
Gene ID: HRGMv2_0719_11_23
Type: CAZyme
Location: 34072 - 35832 (-)
Type: CAZyme
Location: 34072 - 35832 (-)
Gene ID: HRGMv2_0719_11_24
Type: TF
Location: 36201 - 37133 (+)
Type: TF
Location: 36201 - 37133 (+)
Gene ID: HRGMv2_0719_11_25
Type: pfam
Location: 37543 - 38625 (-)
Type: pfam
Location: 37543 - 38625 (-)
Gene ID: HRGMv2_0719_11_26
Type: TC
Location: 38803 - 39627 (-)
Type: TC
Location: 38803 - 39627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_11_20 | vegetarian > omnivore | 1.42510 | 0.02785 |
| HRGMv2_0719_11_20 | vegetarian > vegan | 17.74709 | 0.00565 |
| HRGMv2_0719_11_21 | vegetarian > omnivore | 1.70838 | 0.02785 |
| HRGMv2_0719_11_21 | vegetarian > vegan | 18.79741 | 0.00565 |
| HRGMv2_0719_11_22 | vegetarian > omnivore | 1.70394 | 0.02785 |
| HRGMv2_0719_11_22 | vegetarian > vegan | 18.68101 | 0.00565 |
| HRGMv2_0719_11_24 | vegetarian > omnivore | 2.36206 | 0.02785 |
| HRGMv2_0719_11_24 | vegetarian > vegan | 18.09404 | 0.00565 |
| HRGMv2_0719_11_25 | vegetarian > omnivore | 1.90695 | 0.02785 |
| HRGMv2_0719_11_25 | vegetarian > vegan | 17.70223 | 0.00565 |
| HRGMv2_0719_11_26 | vegetarian > omnivore | 1.61050 | 0.02785 |
| HRGMv2_0719_11_26 | vegetarian > vegan | 3.87803 | 0.00565 |