Cluster: HRGMv2_0719_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0719
- CGC Family ID: CGCFAM_00674
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0719_7 | HRGMv2_0719_7_40 | 54982 | 55872 | - | 3.A.1.1.34 |
| TC | HRGMv2_0719_7 | HRGMv2_0719_7_41 | 55859 | 56752 | - | 3.A.1.1.11 |
| STP | HRGMv2_0719_7 | HRGMv2_0719_7_42 | 56777 | 58723 | - | SBP_bac_1 |
| NULL(UNKNOWN) | HRGMv2_0719_7 | HRGMv2_0719_7_43 | 58733 | 60235 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0719_7 | HRGMv2_0719_7_44 | 60232 | 61953 | - | GH43 |
Gene ID: HRGMv2_0719_7_40
Type: TC
Location: 54982 - 55872 (-)
Type: TC
Location: 54982 - 55872 (-)
Gene ID: HRGMv2_0719_7_41
Type: TC
Location: 55859 - 56752 (-)
Type: TC
Location: 55859 - 56752 (-)
Gene ID: HRGMv2_0719_7_42
Type: STP
Location: 56777 - 58723 (-)
Type: STP
Location: 56777 - 58723 (-)
Gene ID: HRGMv2_0719_7_43
Type:
Location: 58733 - 60235 (-)
Type:
Location: 58733 - 60235 (-)
Gene ID: HRGMv2_0719_7_44
Type: CAZyme
Location: 60232 - 61953 (-)
Type: CAZyme
Location: 60232 - 61953 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_7_40 | vegetarian > omnivore | 2.49805 | 0.02785 |
| HRGMv2_0719_7_40 | vegetarian > vegan | 3.82286 | 0.00565 |
| HRGMv2_0719_7_41 | vegetarian > omnivore | 2.23435 | 0.02785 |
| HRGMv2_0719_7_41 | vegetarian > vegan | 19.98756 | 0.00565 |
| HRGMv2_0719_7_42 | vegetarian > omnivore | 2.52798 | 0.02785 |
| HRGMv2_0719_7_42 | vegetarian > vegan | 3.28112 | 0.00565 |
| HRGMv2_0719_7_43 | vegetarian > omnivore | 2.66732 | 0.02785 |
| HRGMv2_0719_7_43 | vegetarian > vegan | 5.90619 | 0.00565 |
| HRGMv2_0719_7_44 | vegetarian > omnivore | 2.15010 | 0.02785 |
| HRGMv2_0719_7_44 | vegetarian > vegan | 6.14093 | 0.00565 |