Cluster: HRGMv2_0719_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0719
- CGC Family ID: CGCFAM_09759
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0719_1 | HRGMv2_0719_1_1 | 1 | 4500 | - | GH43_33 |
| pfam | HRGMv2_0719_1 | HRGMv2_0719_1_2 | 4709 | 5563 | - | Lactamase_B | Lactamase_B_2 |
| pfam | HRGMv2_0719_1 | HRGMv2_0719_1_3 | 5750 | 6484 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | HRGMv2_0719_1 | HRGMv2_0719_1_4 | 6493 | 7341 | - | 3.A.1.25.4 |
| TC | HRGMv2_0719_1 | HRGMv2_0719_1_5 | 7334 | 8197 | - | 3.A.1.26.9 |
| TC | HRGMv2_0719_1 | HRGMv2_0719_1_6 | 8188 | 9015 | - | 3.A.1.26.7 |
Gene ID: HRGMv2_0719_1_1
Type: CAZyme
Location: 1 - 4500 (-)
Type: CAZyme
Location: 1 - 4500 (-)
Gene ID: HRGMv2_0719_1_2
Type: pfam
Location: 4709 - 5563 (-)
Type: pfam
Location: 4709 - 5563 (-)
Gene ID: HRGMv2_0719_1_3
Type: pfam
Location: 5750 - 6484 (-)
Type: pfam
Location: 5750 - 6484 (-)
Gene ID: HRGMv2_0719_1_4
Type: TC
Location: 6493 - 7341 (-)
Type: TC
Location: 6493 - 7341 (-)
Gene ID: HRGMv2_0719_1_5
Type: TC
Location: 7334 - 8197 (-)
Type: TC
Location: 7334 - 8197 (-)
Gene ID: HRGMv2_0719_1_6
Type: TC
Location: 8188 - 9015 (-)
Type: TC
Location: 8188 - 9015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_1_4 | vegetarian > omnivore | 2.29091 | 0.02785 |
| HRGMv2_0719_1_4 | vegetarian > vegan | 1.50681 | 0.00565 |
| HRGMv2_0719_1_5 | vegetarian > omnivore | 2.16065 | 0.02785 |
| HRGMv2_0719_1_5 | vegetarian > vegan | 1.53149 | 0.00565 |
| HRGMv2_0719_1_6 | vegetarian > omnivore | 1.40410 | 0.02785 |
| HRGMv2_0719_1_6 | vegetarian > vegan | 1.39299 | 0.00565 |