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Cluster: HRGMv2_0716_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0716_28 HRGMv2_0716_28_3 2903 4741 - GH127
STP HRGMv2_0716_28 HRGMv2_0716_28_4 4852 6105 - SBP_bac_1
TC HRGMv2_0716_28 HRGMv2_0716_28_5 6142 7005 - 3.A.1.1.39
TC HRGMv2_0716_28 HRGMv2_0716_28_6 6995 7906 - 3.A.1.1.11
TF HRGMv2_0716_28 HRGMv2_0716_28_7 8085 9593 + HTH_AraC | HTH_AraC
pfam HRGMv2_0716_28 HRGMv2_0716_28_8 9834 10664 - AP_endonuc_2
TC HRGMv2_0716_28 HRGMv2_0716_28_9 10716 11546 - 3.A.1.1.41
TC HRGMv2_0716_28 HRGMv2_0716_28_10 11560 12447 - 3.A.1.1.20
TC HRGMv2_0716_28 HRGMv2_0716_28_11 12613 13908 - 3.A.1.1.5
TF HRGMv2_0716_28 HRGMv2_0716_28_12 14165 15271 - GntR
TF HRGMv2_0716_28 HRGMv2_0716_28_13 15420 17597 - HTH_AraC
TC HRGMv2_0716_28 HRGMv2_0716_28_14 17871 18806 + 3.A.1.1.10
TC HRGMv2_0716_28 HRGMv2_0716_28_15 18820 19728 + 3.A.1.1.10
NULL(UNKNOWN) HRGMv2_0716_28 HRGMv2_0716_28_16 19740 20531 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0716_28 HRGMv2_0716_28_17 20584 22161 + 3.A.1.1.10
Gene ID: HRGMv2_0716_28_3
Type: CAZyme
Location: 2903 - 4741 (-)
Gene ID: HRGMv2_0716_28_4
Type: STP
Location: 4852 - 6105 (-)
Gene ID: HRGMv2_0716_28_5
Type: TC
Location: 6142 - 7005 (-)
Gene ID: HRGMv2_0716_28_6
Type: TC
Location: 6995 - 7906 (-)
Gene ID: HRGMv2_0716_28_7
Type: TF
Location: 8085 - 9593 (+)
Gene ID: HRGMv2_0716_28_8
Type: pfam
Location: 9834 - 10664 (-)
Gene ID: HRGMv2_0716_28_9
Type: TC
Location: 10716 - 11546 (-)
Gene ID: HRGMv2_0716_28_10
Type: TC
Location: 11560 - 12447 (-)
Gene ID: HRGMv2_0716_28_11
Type: TC
Location: 12613 - 13908 (-)
Gene ID: HRGMv2_0716_28_12
Type: TF
Location: 14165 - 15271 (-)
Gene ID: HRGMv2_0716_28_13
Type: TF
Location: 15420 - 17597 (-)
Gene ID: HRGMv2_0716_28_14
Type: TC
Location: 17871 - 18806 (+)
Gene ID: HRGMv2_0716_28_15
Type: TC
Location: 18820 - 19728 (+)
Gene ID: HRGMv2_0716_28_16
Type:
Location: 19740 - 20531 (+)
Gene ID: HRGMv2_0716_28_17
Type: TC
Location: 20584 - 22161 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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