Cluster: HRGMv2_0713_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0713
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0713_2 | HRGMv2_0713_2_72 | 86313 | 87935 | - | GH32 |
| STP | HRGMv2_0713_2 | HRGMv2_0713_2_73 | 87896 | 88846 | - | PfkB |
| pfam | HRGMv2_0713_2 | HRGMv2_0713_2_74 | 88856 | 89857 | - | URO-D |
| CAZyme | HRGMv2_0713_2 | HRGMv2_0713_2_75 | 89868 | 91376 | - | GH32 |
| pfam | HRGMv2_0713_2 | HRGMv2_0713_2_76 | 91388 | 93148 | - | CBM_4_9 |
| NULL(UNKNOWN) | HRGMv2_0713_2 | HRGMv2_0713_2_77 | 93167 | 94837 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0713_2 | HRGMv2_0713_2_78 | 94863 | 95765 | - | 3.A.1.1.10 |
| TC | HRGMv2_0713_2 | HRGMv2_0713_2_79 | 95775 | 96716 | - | 3.A.1.1.10 |
| TF | HRGMv2_0713_2 | HRGMv2_0713_2_80 | 96892 | 97935 | + | 0036955 |
| CAZyme | HRGMv2_0713_2 | HRGMv2_0713_2_81 | 97984 | 99741 | - | GH2 |
| STP | HRGMv2_0713_2 | HRGMv2_0713_2_82 | 99787 | 102552 | - | HATPase_c | HisKA | Response_reg | SBP_bac_3 | SBP_bac_3 |
| TC | HRGMv2_0713_2 | HRGMv2_0713_2_83 | 102549 | 104630 | - | 8.A.59.4.2 |
Gene ID: HRGMv2_0713_2_72
Type: CAZyme
Location: 86313 - 87935 (-)
Type: CAZyme
Location: 86313 - 87935 (-)
Gene ID: HRGMv2_0713_2_73
Type: STP
Location: 87896 - 88846 (-)
Type: STP
Location: 87896 - 88846 (-)
Gene ID: HRGMv2_0713_2_74
Type: pfam
Location: 88856 - 89857 (-)
Type: pfam
Location: 88856 - 89857 (-)
Gene ID: HRGMv2_0713_2_75
Type: CAZyme
Location: 89868 - 91376 (-)
Type: CAZyme
Location: 89868 - 91376 (-)
Gene ID: HRGMv2_0713_2_76
Type: pfam
Location: 91388 - 93148 (-)
Type: pfam
Location: 91388 - 93148 (-)
Gene ID: HRGMv2_0713_2_77
Type:
Location: 93167 - 94837 (-)
Type:
Location: 93167 - 94837 (-)
Gene ID: HRGMv2_0713_2_78
Type: TC
Location: 94863 - 95765 (-)
Type: TC
Location: 94863 - 95765 (-)
Gene ID: HRGMv2_0713_2_79
Type: TC
Location: 95775 - 96716 (-)
Type: TC
Location: 95775 - 96716 (-)
Gene ID: HRGMv2_0713_2_80
Type: TF
Location: 96892 - 97935 (+)
Type: TF
Location: 96892 - 97935 (+)
Gene ID: HRGMv2_0713_2_81
Type: CAZyme
Location: 97984 - 99741 (-)
Type: CAZyme
Location: 97984 - 99741 (-)
Gene ID: HRGMv2_0713_2_82
Type: STP
Location: 99787 - 102552 (-)
Type: STP
Location: 99787 - 102552 (-)
Gene ID: HRGMv2_0713_2_83
Type: TC
Location: 102549 - 104630 (-)
Type: TC
Location: 102549 - 104630 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia ceftriaxoniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0713_2_72 | vegetarian > vegan | 1.18114 | 0.03641 |
| HRGMv2_0713_2_78 | vegetarian > vegan | 1.10791 | 0.03641 |