Cluster: HRGMv2_0713_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0713
- CGC Family ID: CGCFAM_00393
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0713_2 | HRGMv2_0713_2_16 | 24080 | 24658 | + | 2.A.36.2.1 |
| TC | HRGMv2_0713_2 | HRGMv2_0713_2_17 | 24598 | 25263 | + | 2.A.36.2.1 |
| pfam | HRGMv2_0713_2 | HRGMv2_0713_2_18 | 25273 | 25971 | - | SSB |
| CAZyme | HRGMv2_0713_2 | HRGMv2_0713_2_19 | 26004 | 26777 | - | CE4 |
Gene ID: HRGMv2_0713_2_16
Type: TC
Location: 24080 - 24658 (+)
Type: TC
Location: 24080 - 24658 (+)
Gene ID: HRGMv2_0713_2_17
Type: TC
Location: 24598 - 25263 (+)
Type: TC
Location: 24598 - 25263 (+)
Gene ID: HRGMv2_0713_2_18
Type: pfam
Location: 25273 - 25971 (-)
Type: pfam
Location: 25273 - 25971 (-)
Gene ID: HRGMv2_0713_2_19
Type: CAZyme
Location: 26004 - 26777 (-)
Type: CAZyme
Location: 26004 - 26777 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia ceftriaxoniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0713_2_16 | vegetarian > vegan | 1.33245 | 0.03641 |
| HRGMv2_0713_2_18 | vegetarian > vegan | 1.61750 | 0.00821 |