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Cluster: HRGMv2_0713_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0713_27 HRGMv2_0713_27_5 3702 5402 - 1.A.26.1.2
STP HRGMv2_0713_27 HRGMv2_0713_27_6 5543 6727 + Aminotran_1_2
pfam HRGMv2_0713_27 HRGMv2_0713_27_7 6738 7424 + Polysacc_deac_1
CAZyme HRGMv2_0713_27 HRGMv2_0713_27_8 7434 8675 + GH109
TF HRGMv2_0713_27 HRGMv2_0713_27_9 8793 9020 + SpoVT_AbrB
TC HRGMv2_0713_27 HRGMv2_0713_27_10 9017 9868 + 3.A.1.149.1
Gene ID: HRGMv2_0713_27_5
Type: TC
Location: 3702 - 5402 (-)
Gene ID: HRGMv2_0713_27_6
Type: STP
Location: 5543 - 6727 (+)
Gene ID: HRGMv2_0713_27_7
Type: pfam
Location: 6738 - 7424 (+)
Gene ID: HRGMv2_0713_27_8
Type: CAZyme
Location: 7434 - 8675 (+)
Gene ID: HRGMv2_0713_27_9
Type: TF
Location: 8793 - 9020 (+)
Gene ID: HRGMv2_0713_27_10
Type: TC
Location: 9017 - 9868 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0713_27_10 vegetarian > vegan 1.67336 0.03633

🧭 Explore Read Mapping of CGC

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