Cluster: HRGMv2_0713_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0713
- CGC Family ID: CGCFAM_00729
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0713_15 | HRGMv2_0713_15_34 | 31719 | 33038 | + | GT2 |
| pfam | HRGMv2_0713_15 | HRGMv2_0713_15_35 | 33072 | 33329 | - | BofA |
| pfam | HRGMv2_0713_15 | HRGMv2_0713_15_36 | 33389 | 34084 | - | PhoU | PhoU |
| TC | HRGMv2_0713_15 | HRGMv2_0713_15_37 | 34086 | 34835 | - | 3.A.1.7.5 |
| TC | HRGMv2_0713_15 | HRGMv2_0713_15_38 | 34838 | 35752 | - | 3.A.1.7.5 |
| TC | HRGMv2_0713_15 | HRGMv2_0713_15_39 | 35763 | 36656 | - | 3.A.1.7.5 |
Gene ID: HRGMv2_0713_15_34
Type: CAZyme
Location: 31719 - 33038 (+)
Type: CAZyme
Location: 31719 - 33038 (+)
Gene ID: HRGMv2_0713_15_35
Type: pfam
Location: 33072 - 33329 (-)
Type: pfam
Location: 33072 - 33329 (-)
Gene ID: HRGMv2_0713_15_36
Type: pfam
Location: 33389 - 34084 (-)
Type: pfam
Location: 33389 - 34084 (-)
Gene ID: HRGMv2_0713_15_37
Type: TC
Location: 34086 - 34835 (-)
Type: TC
Location: 34086 - 34835 (-)
Gene ID: HRGMv2_0713_15_38
Type: TC
Location: 34838 - 35752 (-)
Type: TC
Location: 34838 - 35752 (-)
Gene ID: HRGMv2_0713_15_39
Type: TC
Location: 35763 - 36656 (-)
Type: TC
Location: 35763 - 36656 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia ceftriaxoniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0713_15_39 | vegetarian > vegan | 1.04711 | 0.03641 |