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Cluster: HRGMv2_0713_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0713_15 HRGMv2_0713_15_20 16824 17588 - 3.A.1.103.1
TC HRGMv2_0713_15 HRGMv2_0713_15_21 17590 18393 - 3.A.1.103.4
CAZyme HRGMv2_0713_15 HRGMv2_0713_15_22 18403 19176 - GT2
CAZyme HRGMv2_0713_15 HRGMv2_0713_15_23 19188 20276 - GT4
TC HRGMv2_0713_15 HRGMv2_0713_15_24 20295 20981 - 9.B.18.1.3
STP HRGMv2_0713_15 HRGMv2_0713_15_25 21095 22777 - HATPase_c | HisKA
TF HRGMv2_0713_15 HRGMv2_0713_15_26 22790 23455 - Trans_reg_C
TC HRGMv2_0713_15 HRGMv2_0713_15_27 23460 25103 - 2.A.58.2.2
Gene ID: HRGMv2_0713_15_20
Type: TC
Location: 16824 - 17588 (-)
Gene ID: HRGMv2_0713_15_21
Type: TC
Location: 17590 - 18393 (-)
Gene ID: HRGMv2_0713_15_22
Type: CAZyme
Location: 18403 - 19176 (-)
Gene ID: HRGMv2_0713_15_23
Type: CAZyme
Location: 19188 - 20276 (-)
Gene ID: HRGMv2_0713_15_24
Type: TC
Location: 20295 - 20981 (-)
Gene ID: HRGMv2_0713_15_25
Type: STP
Location: 21095 - 22777 (-)
Gene ID: HRGMv2_0713_15_26
Type: TF
Location: 22790 - 23455 (-)
Gene ID: HRGMv2_0713_15_27
Type: TC
Location: 23460 - 25103 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0713_15_20 vegetarian > vegan 1.07308 0.03641

🧭 Explore Read Mapping of CGC

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