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Cluster: HRGMv2_0708_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0708_15 HRGMv2_0708_15_15 12049 13452 + 2.A.66.1.32
STP HRGMv2_0708_15 HRGMv2_0708_15_16 13583 14104 + Sigma70_r2 | Sigma70_r4_2
pfam HRGMv2_0708_15 HRGMv2_0708_15_17 14097 15398 + Beta_propel
CAZyme HRGMv2_0708_15 HRGMv2_0708_15_18 15507 17069 - GH13_36
TC HRGMv2_0708_15 HRGMv2_0708_15_19 17074 17925 - 3.A.1.1.27
TC HRGMv2_0708_15 HRGMv2_0708_15_20 17922 19277 - 3.A.1.1.27
pfam HRGMv2_0708_15 HRGMv2_0708_15_21 19338 20822 - SBP_bac_1 | SBP_bac_8
CAZyme HRGMv2_0708_15 HRGMv2_0708_15_22 20932 22587 - CBM34 | GH13_20
Gene ID: HRGMv2_0708_15_15
Type: TC
Location: 12049 - 13452 (+)
Gene ID: HRGMv2_0708_15_16
Type: STP
Location: 13583 - 14104 (+)
Gene ID: HRGMv2_0708_15_17
Type: pfam
Location: 14097 - 15398 (+)
Gene ID: HRGMv2_0708_15_18
Type: CAZyme
Location: 15507 - 17069 (-)
Gene ID: HRGMv2_0708_15_19
Type: TC
Location: 17074 - 17925 (-)
Gene ID: HRGMv2_0708_15_20
Type: TC
Location: 17922 - 19277 (-)
Gene ID: HRGMv2_0708_15_21
Type: pfam
Location: 19338 - 20822 (-)
Gene ID: HRGMv2_0708_15_22
Type: CAZyme
Location: 20932 - 22587 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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