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Cluster: HRGMv2_0705_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0705_1 HRGMv2_0705_1_270 324812 326635 + GH20
pfam HRGMv2_0705_1 HRGMv2_0705_1_271 326713 327984 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TF HRGMv2_0705_1 HRGMv2_0705_1_272 328151 329140 + HTH_AraC
TC HRGMv2_0705_1 HRGMv2_0705_1_273 329202 330974 + 3.A.1.21.1
TC HRGMv2_0705_1 HRGMv2_0705_1_274 330979 332736 + 3.A.1.21.1
TC HRGMv2_0705_1 HRGMv2_0705_1_275 332746 333531 + 2.A.5.5.2
TF HRGMv2_0705_1 HRGMv2_0705_1_276 333822 334193 + 0040266
pfam HRGMv2_0705_1 HRGMv2_0705_1_277 334186 334551 + YgbA_NO
TC HRGMv2_0705_1 HRGMv2_0705_1_278 334544 336271 + 3.A.1.106.12
TC HRGMv2_0705_1 HRGMv2_0705_1_279 336268 337956 + 3.A.1.106.11
TC HRGMv2_0705_1 HRGMv2_0705_1_280 337953 338648 + 3.A.1.18.3
TC HRGMv2_0705_1 HRGMv2_0705_1_281 338645 339322 + 3.A.1.18.3
TC HRGMv2_0705_1 HRGMv2_0705_1_282 339319 340740 + 3.A.1.18.3
pfam HRGMv2_0705_1 HRGMv2_0705_1_283 340841 344359 + Peptidase_M60 | M60-like_N
CAZyme HRGMv2_0705_1 HRGMv2_0705_1_284 344563 345408 + CE4
Gene ID: HRGMv2_0705_1_270
Type: CAZyme
Location: 324812 - 326635 (+)
Gene ID: HRGMv2_0705_1_271
Type: pfam
Location: 326713 - 327984 (-)
Gene ID: HRGMv2_0705_1_272
Type: TF
Location: 328151 - 329140 (+)
Gene ID: HRGMv2_0705_1_273
Type: TC
Location: 329202 - 330974 (+)
Gene ID: HRGMv2_0705_1_274
Type: TC
Location: 330979 - 332736 (+)
Gene ID: HRGMv2_0705_1_275
Type: TC
Location: 332746 - 333531 (+)
Gene ID: HRGMv2_0705_1_276
Type: TF
Location: 333822 - 334193 (+)
Gene ID: HRGMv2_0705_1_277
Type: pfam
Location: 334186 - 334551 (+)
Gene ID: HRGMv2_0705_1_278
Type: TC
Location: 334544 - 336271 (+)
Gene ID: HRGMv2_0705_1_279
Type: TC
Location: 336268 - 337956 (+)
Gene ID: HRGMv2_0705_1_280
Type: TC
Location: 337953 - 338648 (+)
Gene ID: HRGMv2_0705_1_281
Type: TC
Location: 338645 - 339322 (+)
Gene ID: HRGMv2_0705_1_282
Type: TC
Location: 339319 - 340740 (+)
Gene ID: HRGMv2_0705_1_283
Type: pfam
Location: 340841 - 344359 (+)
Gene ID: HRGMv2_0705_1_284
Type: CAZyme
Location: 344563 - 345408 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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