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Cluster: HRGMv2_0705_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0705_4 HRGMv2_0705_4_28 36096 37850 + 3.A.2.1.7
TC HRGMv2_0705_4 HRGMv2_0705_4_29 37843 38721 + 3.A.2.1.5
TC HRGMv2_0705_4 HRGMv2_0705_4_30 38723 40117 + 3.A.2.1.5
pfam HRGMv2_0705_4 HRGMv2_0705_4_31 40117 40542 + ATP-synt_DE | ATP-synt_DE_N
TF HRGMv2_0705_4 HRGMv2_0705_4_32 40576 41439 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0705_4 HRGMv2_0705_4_33 41601 42968 + GH1
STP HRGMv2_0705_4 HRGMv2_0705_4_34 42965 44215 + SBP_bac_1
TC HRGMv2_0705_4 HRGMv2_0705_4_35 44220 45152 + 3.A.1.1.38
TC HRGMv2_0705_4 HRGMv2_0705_4_36 45163 46005 + 3.A.1.1.11
CAZyme HRGMv2_0705_4 HRGMv2_0705_4_37 46019 48448 + GH5
CAZyme HRGMv2_0705_4 HRGMv2_0705_4_38 48457 50796 + CBM23
Gene ID: HRGMv2_0705_4_28
Type: TC
Location: 36096 - 37850 (+)
Gene ID: HRGMv2_0705_4_29
Type: TC
Location: 37843 - 38721 (+)
Gene ID: HRGMv2_0705_4_30
Type: TC
Location: 38723 - 40117 (+)
Gene ID: HRGMv2_0705_4_31
Type: pfam
Location: 40117 - 40542 (+)
Gene ID: HRGMv2_0705_4_32
Type: TF
Location: 40576 - 41439 (-)
Gene ID: HRGMv2_0705_4_33
Type: CAZyme
Location: 41601 - 42968 (+)
Gene ID: HRGMv2_0705_4_34
Type: STP
Location: 42965 - 44215 (+)
Gene ID: HRGMv2_0705_4_35
Type: TC
Location: 44220 - 45152 (+)
Gene ID: HRGMv2_0705_4_36
Type: TC
Location: 45163 - 46005 (+)
Gene ID: HRGMv2_0705_4_37
Type: CAZyme
Location: 46019 - 48448 (+)
Gene ID: HRGMv2_0705_4_38
Type: CAZyme
Location: 48457 - 50796 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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