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Cluster: HRGMv2_0705_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_40 57010 58620 + GH78
STP HRGMv2_0705_3 HRGMv2_0705_3_41 58655 59170 + AraC_binding
STP HRGMv2_0705_3 HRGMv2_0705_3_42 59145 59495 + HTH_18
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_43 59644 61608 + GH3
STP HRGMv2_0705_3 HRGMv2_0705_3_44 61630 63378 + SBP_bac_1
TC HRGMv2_0705_3 HRGMv2_0705_3_45 63388 64332 + 3.A.1.1.21
TC HRGMv2_0705_3 HRGMv2_0705_3_46 64325 65221 + 3.A.1.1.34
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_47 65242 66993 + GH43_33
pfam HRGMv2_0705_3 HRGMv2_0705_3_48 67003 71472 + CarboxypepD_reg | Flg_new_2 | Flg_new_2 | Flg_new_2
NULL(UNKNOWN) HRGMv2_0705_3 HRGMv2_0705_3_49 71522 71869 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_50 72067 74328 + GH3
NULL(UNKNOWN) HRGMv2_0705_3 HRGMv2_0705_3_51 74344 76059 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0705_3 HRGMv2_0705_3_52 76079 77080 + 3.A.1.1.10
TC HRGMv2_0705_3 HRGMv2_0705_3_53 77094 77981 + 3.A.1.1.10
Gene ID: HRGMv2_0705_3_40
Type: CAZyme
Location: 57010 - 58620 (+)
Gene ID: HRGMv2_0705_3_41
Type: STP
Location: 58655 - 59170 (+)
Gene ID: HRGMv2_0705_3_42
Type: STP
Location: 59145 - 59495 (+)
Gene ID: HRGMv2_0705_3_43
Type: CAZyme
Location: 59644 - 61608 (+)
Gene ID: HRGMv2_0705_3_44
Type: STP
Location: 61630 - 63378 (+)
Gene ID: HRGMv2_0705_3_45
Type: TC
Location: 63388 - 64332 (+)
Gene ID: HRGMv2_0705_3_46
Type: TC
Location: 64325 - 65221 (+)
Gene ID: HRGMv2_0705_3_47
Type: CAZyme
Location: 65242 - 66993 (+)
Gene ID: HRGMv2_0705_3_48
Type: pfam
Location: 67003 - 71472 (+)
Gene ID: HRGMv2_0705_3_49
Type:
Location: 71522 - 71869 (-)
Gene ID: HRGMv2_0705_3_50
Type: CAZyme
Location: 72067 - 74328 (+)
Gene ID: HRGMv2_0705_3_51
Type:
Location: 74344 - 76059 (+)
Gene ID: HRGMv2_0705_3_52
Type: TC
Location: 76079 - 77080 (+)
Gene ID: HRGMv2_0705_3_53
Type: TC
Location: 77094 - 77981 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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