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Cluster: HRGMv2_0705_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_6 7679 9733 + GH36
STP HRGMv2_0705_3 HRGMv2_0705_3_7 9745 11361 + SBP_bac_1
pfam HRGMv2_0705_3 HRGMv2_0705_3_8 11363 12286 + BPD_transp_1
TC HRGMv2_0705_3 HRGMv2_0705_3_9 12279 13181 + 3.A.1.1.1
NULL(UNKNOWN) HRGMv2_0705_3 HRGMv2_0705_3_10 13209 16442 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_11 16451 18433 + GH163
pfam HRGMv2_0705_3 HRGMv2_0705_3_12 18456 21749 + Flg_new | Flg_new | Flg_new
CAZyme HRGMv2_0705_3 HRGMv2_0705_3_13 21829 23247 + GH142
Gene ID: HRGMv2_0705_3_6
Type: CAZyme
Location: 7679 - 9733 (+)
Gene ID: HRGMv2_0705_3_7
Type: STP
Location: 9745 - 11361 (+)
Gene ID: HRGMv2_0705_3_8
Type: pfam
Location: 11363 - 12286 (+)
Gene ID: HRGMv2_0705_3_9
Type: TC
Location: 12279 - 13181 (+)
Gene ID: HRGMv2_0705_3_10
Type:
Location: 13209 - 16442 (+)
Gene ID: HRGMv2_0705_3_11
Type: CAZyme
Location: 16451 - 18433 (+)
Gene ID: HRGMv2_0705_3_12
Type: pfam
Location: 18456 - 21749 (+)
Gene ID: HRGMv2_0705_3_13
Type: CAZyme
Location: 21829 - 23247 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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