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Cluster: HRGMv2_0696_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0696_12 HRGMv2_0696_12_22 28539 30353 + GH163
TC HRGMv2_0696_12 HRGMv2_0696_12_23 30528 35321 - 2.A.16.2.2
TF HRGMv2_0696_12 HRGMv2_0696_12_24 35707 36627 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_0696_12 HRGMv2_0696_12_25 36707 39013 + GH78
STP HRGMv2_0696_12 HRGMv2_0696_12_26 39010 40665 + SBP_bac_1
pfam HRGMv2_0696_12 HRGMv2_0696_12_27 40710 44138 + Big_2 | Big_2 | Big_2 | Big_2
TC HRGMv2_0696_12 HRGMv2_0696_12_28 44212 46155 + 3.A.1.1.46
TC HRGMv2_0696_12 HRGMv2_0696_12_29 46167 47009 + 3.A.1.1.9
Gene ID: HRGMv2_0696_12_22
Type: CAZyme
Location: 28539 - 30353 (+)
Gene ID: HRGMv2_0696_12_23
Type: TC
Location: 30528 - 35321 (-)
Gene ID: HRGMv2_0696_12_24
Type: TF
Location: 35707 - 36627 (+)
Gene ID: HRGMv2_0696_12_25
Type: CAZyme
Location: 36707 - 39013 (+)
Gene ID: HRGMv2_0696_12_26
Type: STP
Location: 39010 - 40665 (+)
Gene ID: HRGMv2_0696_12_27
Type: pfam
Location: 40710 - 44138 (+)
Gene ID: HRGMv2_0696_12_28
Type: TC
Location: 44212 - 46155 (+)
Gene ID: HRGMv2_0696_12_29
Type: TC
Location: 46167 - 47009 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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