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Cluster: HRGMv2_0688_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0688_3 HRGMv2_0688_3_65 74259 75128 - 8.A.5.1.4
TF HRGMv2_0688_3 HRGMv2_0688_3_66 75241 75630 + MerR
CAZyme HRGMv2_0688_3 HRGMv2_0688_3_67 75690 77756 - CBM67 | GH78
pfam HRGMv2_0688_3 HRGMv2_0688_3_68 77873 79675 - Fucose_iso_C | Fucose_iso_N1 | Fucose_iso_N2
pfam HRGMv2_0688_3 HRGMv2_0688_3_69 79827 80744 - PMI_typeI_cat | MPI_cupin_dom
CAZyme HRGMv2_0688_3 HRGMv2_0688_3_70 80749 81948 - GH29
TC HRGMv2_0688_3 HRGMv2_0688_3_71 82294 83406 + 3.B.1.1.5
NULL(UNKNOWN) HRGMv2_0688_3 HRGMv2_0688_3_72 83423 83626 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0688_3 HRGMv2_0688_3_73 83735 85330 - GH20
CAZyme HRGMv2_0688_3 HRGMv2_0688_3_74 85529 88147 - CBM67 | GH78
Gene ID: HRGMv2_0688_3_65
Type: TC
Location: 74259 - 75128 (-)
Gene ID: HRGMv2_0688_3_66
Type: TF
Location: 75241 - 75630 (+)
Gene ID: HRGMv2_0688_3_67
Type: CAZyme
Location: 75690 - 77756 (-)
Gene ID: HRGMv2_0688_3_68
Type: pfam
Location: 77873 - 79675 (-)
Gene ID: HRGMv2_0688_3_69
Type: pfam
Location: 79827 - 80744 (-)
Gene ID: HRGMv2_0688_3_70
Type: CAZyme
Location: 80749 - 81948 (-)
Gene ID: HRGMv2_0688_3_71
Type: TC
Location: 82294 - 83406 (+)
Gene ID: HRGMv2_0688_3_72
Type:
Location: 83423 - 83626 (+)
Gene ID: HRGMv2_0688_3_73
Type: CAZyme
Location: 83735 - 85330 (-)
Gene ID: HRGMv2_0688_3_74
Type: CAZyme
Location: 85529 - 88147 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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