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Cluster: HRGMv2_0688_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0688_10 HRGMv2_0688_10_4 5824 8103 + GH78
NULL(UNKNOWN) HRGMv2_0688_10 HRGMv2_0688_10_5 8115 9794 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0688_10 HRGMv2_0688_10_6 9822 10748 + BPD_transp_1
TC HRGMv2_0688_10 HRGMv2_0688_10_7 10751 11629 + 3.A.1.1.41
NULL(UNKNOWN) HRGMv2_0688_10 HRGMv2_0688_10_8 11720 14845 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0688_10 HRGMv2_0688_10_9 14849 16834 + GH163
pfam HRGMv2_0688_10 HRGMv2_0688_10_10 16831 19842 + Big_2
pfam HRGMv2_0688_10 HRGMv2_0688_10_11 19956 21116 + FAD_binding_2 | GIDA | DAO | FAD_oxidored | FAD_oxidored | NAD_binding_8
CAZyme HRGMv2_0688_10 HRGMv2_0688_10_12 21187 23385 + GH78
Gene ID: HRGMv2_0688_10_4
Type: CAZyme
Location: 5824 - 8103 (+)
Gene ID: HRGMv2_0688_10_5
Type:
Location: 8115 - 9794 (+)
Gene ID: HRGMv2_0688_10_6
Type: pfam
Location: 9822 - 10748 (+)
Gene ID: HRGMv2_0688_10_7
Type: TC
Location: 10751 - 11629 (+)
Gene ID: HRGMv2_0688_10_8
Type:
Location: 11720 - 14845 (+)
Gene ID: HRGMv2_0688_10_9
Type: CAZyme
Location: 14849 - 16834 (+)
Gene ID: HRGMv2_0688_10_10
Type: pfam
Location: 16831 - 19842 (+)
Gene ID: HRGMv2_0688_10_11
Type: pfam
Location: 19956 - 21116 (+)
Gene ID: HRGMv2_0688_10_12
Type: CAZyme
Location: 21187 - 23385 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0688_10_11 vegetarian > vegan 2.22319 0.04126
HRGMv2_0688_10_12 vegetarian > vegan 2.37892 0.04124

🧭 Explore Read Mapping of CGC

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