Cluster: HRGMv2_0686_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0686
- CGC Family ID: CGCFAM_00438
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0686_2 | HRGMv2_0686_2_110 | 147884 | 150085 | + | CBM20 | GH13_2 |
| TF | HRGMv2_0686_2 | HRGMv2_0686_2_111 | 150123 | 151238 | - | LacI | LacI |
| NULL(UNKNOWN) | HRGMv2_0686_2 | HRGMv2_0686_2_112 | 151430 | 153139 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0686_2 | HRGMv2_0686_2_113 | 153197 | 154870 | + | CBM34 | GH13_20 |
| pfam | HRGMv2_0686_2 | HRGMv2_0686_2_114 | 154857 | 156344 | + | SBP_bac_1 | SBP_bac_8 |
| TC | HRGMv2_0686_2 | HRGMv2_0686_2_115 | 156362 | 157699 | + | 3.A.1.1.27 |
| TC | HRGMv2_0686_2 | HRGMv2_0686_2_116 | 157696 | 158556 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_0686_2 | HRGMv2_0686_2_117 | 158559 | 160808 | + | GT35 |
| CAZyme | HRGMv2_0686_2 | HRGMv2_0686_2_118 | 160904 | 162397 | + | GH77 |
Gene ID: HRGMv2_0686_2_110
Type: CAZyme
Location: 147884 - 150085 (+)
Type: CAZyme
Location: 147884 - 150085 (+)
Gene ID: HRGMv2_0686_2_111
Type: TF
Location: 150123 - 151238 (-)
Type: TF
Location: 150123 - 151238 (-)
Gene ID: HRGMv2_0686_2_112
Type:
Location: 151430 - 153139 (+)
Type:
Location: 151430 - 153139 (+)
Gene ID: HRGMv2_0686_2_113
Type: CAZyme
Location: 153197 - 154870 (+)
Type: CAZyme
Location: 153197 - 154870 (+)
Gene ID: HRGMv2_0686_2_114
Type: pfam
Location: 154857 - 156344 (+)
Type: pfam
Location: 154857 - 156344 (+)
Gene ID: HRGMv2_0686_2_115
Type: TC
Location: 156362 - 157699 (+)
Type: TC
Location: 156362 - 157699 (+)
Gene ID: HRGMv2_0686_2_116
Type: TC
Location: 157696 - 158556 (+)
Type: TC
Location: 157696 - 158556 (+)
Gene ID: HRGMv2_0686_2_117
Type: CAZyme
Location: 158559 - 160808 (+)
Type: CAZyme
Location: 158559 - 160808 (+)
Gene ID: HRGMv2_0686_2_118
Type: CAZyme
Location: 160904 - 162397 (+)
Type: CAZyme
Location: 160904 - 162397 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Scatosoma
Species
Scatosoma sp003448195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0686_2_110 | vegetarian > omnivore | 1.11412 | 0.00222 |
| HRGMv2_0686_2_111 | vegetarian > omnivore | 2.78719 | 0.00222 |
| HRGMv2_0686_2_111 | vegetarian > vegan | 2.05535 | 0.02650 |
| HRGMv2_0686_2_114 | vegetarian > omnivore | 1.27814 | 0.00222 |
| HRGMv2_0686_2_114 | vegetarian > vegan | 1.77458 | 0.02650 |
| HRGMv2_0686_2_115 | vegetarian > omnivore | 2.33529 | 0.00222 |
| HRGMv2_0686_2_115 | vegetarian > vegan | 3.18580 | 0.02650 |
| HRGMv2_0686_2_116 | vegetarian > omnivore | 1.72766 | 0.00222 |
| HRGMv2_0686_2_116 | vegetarian > vegan | 2.05024 | 0.02650 |
| HRGMv2_0686_2_117 | vegetarian > vegan | 1.50147 | 0.02650 |
| HRGMv2_0686_2_118 | vegetarian > omnivore | 1.38071 | 0.00222 |