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Cluster: HRGMv2_0686_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_27 37167 41855 + CBM67
STP HRGMv2_0686_2 HRGMv2_0686_2_28 41917 43227 + SBP_bac_1
TC HRGMv2_0686_2 HRGMv2_0686_2_29 43306 44232 + 3.A.1.1.33
TC HRGMv2_0686_2 HRGMv2_0686_2_30 44229 45104 + 3.A.1.1.18
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_31 45107 47599 + GH106
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_32 47599 48858 + GH109
NULL(UNKNOWN) HRGMv2_0686_2 HRGMv2_0686_2_33 48855 50831 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_34 50882 52111 + GH37
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_35 52131 54416 + GH94
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_36 54577 57495 - GH106
CAZyme HRGMv2_0686_2 HRGMv2_0686_2_37 57510 59138 - GH78
Gene ID: HRGMv2_0686_2_27
Type: CAZyme
Location: 37167 - 41855 (+)
Gene ID: HRGMv2_0686_2_28
Type: STP
Location: 41917 - 43227 (+)
Gene ID: HRGMv2_0686_2_29
Type: TC
Location: 43306 - 44232 (+)
Gene ID: HRGMv2_0686_2_30
Type: TC
Location: 44229 - 45104 (+)
Gene ID: HRGMv2_0686_2_31
Type: CAZyme
Location: 45107 - 47599 (+)
Gene ID: HRGMv2_0686_2_32
Type: CAZyme
Location: 47599 - 48858 (+)
Gene ID: HRGMv2_0686_2_33
Type:
Location: 48855 - 50831 (+)
Gene ID: HRGMv2_0686_2_34
Type: CAZyme
Location: 50882 - 52111 (+)
Gene ID: HRGMv2_0686_2_35
Type: CAZyme
Location: 52131 - 54416 (+)
Gene ID: HRGMv2_0686_2_36
Type: CAZyme
Location: 54577 - 57495 (-)
Gene ID: HRGMv2_0686_2_37
Type: CAZyme
Location: 57510 - 59138 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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