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Cluster: HRGMv2_0677_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0677_17 HRGMv2_0677_17_29 28267 29736 - GH32
pfam HRGMv2_0677_17 HRGMv2_0677_17_30 30268 31488 + ROK
STP HRGMv2_0677_17 HRGMv2_0677_17_31 31729 32739 + Peripla_BP_1
TC HRGMv2_0677_17 HRGMv2_0677_17_32 32898 34388 + 3.A.1.2.20
TC HRGMv2_0677_17 HRGMv2_0677_17_33 34411 35406 + 3.A.1.2.15
pfam HRGMv2_0677_17 HRGMv2_0677_17_34 35470 36960 + FGGY_N | FGGY_C
CAZyme HRGMv2_0677_17 HRGMv2_0677_17_35 36988 38496 + GH32
pfam HRGMv2_0677_17 HRGMv2_0677_17_36 38653 39276 - PhoU_div
TC HRGMv2_0677_17 HRGMv2_0677_17_37 39311 40363 - 2.A.20.1.5
pfam HRGMv2_0677_17 HRGMv2_0677_17_38 40767 41870 + DNA_alkylation
TC HRGMv2_0677_17 HRGMv2_0677_17_39 42156 44576 - 9.B.74.1.3
Gene ID: HRGMv2_0677_17_29
Type: CAZyme
Location: 28267 - 29736 (-)
Gene ID: HRGMv2_0677_17_30
Type: pfam
Location: 30268 - 31488 (+)
Gene ID: HRGMv2_0677_17_31
Type: STP
Location: 31729 - 32739 (+)
Gene ID: HRGMv2_0677_17_32
Type: TC
Location: 32898 - 34388 (+)
Gene ID: HRGMv2_0677_17_33
Type: TC
Location: 34411 - 35406 (+)
Gene ID: HRGMv2_0677_17_34
Type: pfam
Location: 35470 - 36960 (+)
Gene ID: HRGMv2_0677_17_35
Type: CAZyme
Location: 36988 - 38496 (+)
Gene ID: HRGMv2_0677_17_36
Type: pfam
Location: 38653 - 39276 (-)
Gene ID: HRGMv2_0677_17_37
Type: TC
Location: 39311 - 40363 (-)
Gene ID: HRGMv2_0677_17_38
Type: pfam
Location: 40767 - 41870 (+)
Gene ID: HRGMv2_0677_17_39
Type: TC
Location: 42156 - 44576 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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