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Cluster: HRGMv2_0677_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0677_14 HRGMv2_0677_14_2 155 1648 + 3.A.1.2.19
TC HRGMv2_0677_14 HRGMv2_0677_14_3 1645 2619 + 3.A.1.2.1
STP HRGMv2_0677_14 HRGMv2_0677_14_4 2635 3042 + AraC_binding
TC HRGMv2_0677_14 HRGMv2_0677_14_5 3061 4083 + 3.A.1.2.6
pfam HRGMv2_0677_14 HRGMv2_0677_14_6 4140 5618 - UPF0020 | MTS
CAZyme HRGMv2_0677_14 HRGMv2_0677_14_7 5615 6676 - GT28
CAZyme HRGMv2_0677_14 HRGMv2_0677_14_8 7041 8150 + GT28
peptidase HRGMv2_0677_14 HRGMv2_0677_14_9 8367 9068 - S09.UPW
TC HRGMv2_0677_14 HRGMv2_0677_14_10 9115 9768 - 1.A.62.3.1
Gene ID: HRGMv2_0677_14_2
Type: TC
Location: 155 - 1648 (+)
Gene ID: HRGMv2_0677_14_3
Type: TC
Location: 1645 - 2619 (+)
Gene ID: HRGMv2_0677_14_4
Type: STP
Location: 2635 - 3042 (+)
Gene ID: HRGMv2_0677_14_5
Type: TC
Location: 3061 - 4083 (+)
Gene ID: HRGMv2_0677_14_6
Type: pfam
Location: 4140 - 5618 (-)
Gene ID: HRGMv2_0677_14_7
Type: CAZyme
Location: 5615 - 6676 (-)
Gene ID: HRGMv2_0677_14_8
Type: CAZyme
Location: 7041 - 8150 (+)
Gene ID: HRGMv2_0677_14_9
Type: peptidase
Location: 8367 - 9068 (-)
Gene ID: HRGMv2_0677_14_10
Type: TC
Location: 9115 - 9768 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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