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Cluster: HRGMv2_0674_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0674_8 HRGMv2_0674_8_15 19396 20319 + 3.A.1.5.11
TC HRGMv2_0674_8 HRGMv2_0674_8_16 20333 21217 + 3.A.1.5.11
TC HRGMv2_0674_8 HRGMv2_0674_8_17 21292 22797 + 3.A.1.5.3
TC HRGMv2_0674_8 HRGMv2_0674_8_18 22913 23902 + 3.A.1.5.29
TC HRGMv2_0674_8 HRGMv2_0674_8_19 23905 24858 + 3.A.1.5.12
peptidase HRGMv2_0674_8 HRGMv2_0674_8_20 24924 26954 + S09.UPA
CAZyme HRGMv2_0674_8 HRGMv2_0674_8_21 27115 29106 + GH120
NULL(UNKNOWN) HRGMv2_0674_8 HRGMv2_0674_8_22 29284 29580 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0674_8 HRGMv2_0674_8_23 29708 31246 + 2.A.14.1.3
pfam HRGMv2_0674_8 HRGMv2_0674_8_24 31296 32246 + Ldh_1_N | Ldh_1_C
pfam HRGMv2_0674_8 HRGMv2_0674_8_25 32395 33519 + Bmp
CAZyme HRGMv2_0674_8 HRGMv2_0674_8_26 33919 36333 + CBM67 | GH78
pfam HRGMv2_0674_8 HRGMv2_0674_8_27 36410 37786 - Lyase_1 | ASL_C2
TC HRGMv2_0674_8 HRGMv2_0674_8_28 38014 38787 + 3.A.1.3.15
TC HRGMv2_0674_8 HRGMv2_0674_8_29 39020 39685 + 3.A.1.3.15
TC HRGMv2_0674_8 HRGMv2_0674_8_30 39672 40565 + 3.A.1.3.15
Gene ID: HRGMv2_0674_8_15
Type: TC
Location: 19396 - 20319 (+)
Gene ID: HRGMv2_0674_8_16
Type: TC
Location: 20333 - 21217 (+)
Gene ID: HRGMv2_0674_8_17
Type: TC
Location: 21292 - 22797 (+)
Gene ID: HRGMv2_0674_8_18
Type: TC
Location: 22913 - 23902 (+)
Gene ID: HRGMv2_0674_8_19
Type: TC
Location: 23905 - 24858 (+)
Gene ID: HRGMv2_0674_8_20
Type: peptidase
Location: 24924 - 26954 (+)
Gene ID: HRGMv2_0674_8_21
Type: CAZyme
Location: 27115 - 29106 (+)
Gene ID: HRGMv2_0674_8_22
Type:
Location: 29284 - 29580 (+)
Gene ID: HRGMv2_0674_8_23
Type: TC
Location: 29708 - 31246 (+)
Gene ID: HRGMv2_0674_8_24
Type: pfam
Location: 31296 - 32246 (+)
Gene ID: HRGMv2_0674_8_25
Type: pfam
Location: 32395 - 33519 (+)
Gene ID: HRGMv2_0674_8_26
Type: CAZyme
Location: 33919 - 36333 (+)
Gene ID: HRGMv2_0674_8_27
Type: pfam
Location: 36410 - 37786 (-)
Gene ID: HRGMv2_0674_8_28
Type: TC
Location: 38014 - 38787 (+)
Gene ID: HRGMv2_0674_8_29
Type: TC
Location: 39020 - 39685 (+)
Gene ID: HRGMv2_0674_8_30
Type: TC
Location: 39672 - 40565 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0674_8_23 vegetarian > vegan 1.37402 0.00229
HRGMv2_0674_8_24 vegetarian > vegan 1.20704 0.00229

🧭 Explore Read Mapping of CGC

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