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Cluster: HRGMv2_0674_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0674_6 HRGMv2_0674_6_14 16530 17762 - GT4
STP HRGMv2_0674_6 HRGMv2_0674_6_15 18158 21400 - TPR_2
CAZyme HRGMv2_0674_6 HRGMv2_0674_6_16 21415 23754 - GH36
CAZyme HRGMv2_0674_6 HRGMv2_0674_6_17 23751 25883 - GH36
pfam HRGMv2_0674_6 HRGMv2_0674_6_18 25941 26792 - Lactamase_B
TC HRGMv2_0674_6 HRGMv2_0674_6_19 27103 28065 + 3.A.1.1.10
TC HRGMv2_0674_6 HRGMv2_0674_6_20 28096 28974 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_0674_6 HRGMv2_0674_6_21 29048 30763 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0674_6 HRGMv2_0674_6_22 30946 32547 + HTH_AraC | HTH_AraC
TC HRGMv2_0674_6 HRGMv2_0674_6_23 32544 34322 + 8.A.59.2.1
Gene ID: HRGMv2_0674_6_14
Type: CAZyme
Location: 16530 - 17762 (-)
Gene ID: HRGMv2_0674_6_15
Type: STP
Location: 18158 - 21400 (-)
Gene ID: HRGMv2_0674_6_16
Type: CAZyme
Location: 21415 - 23754 (-)
Gene ID: HRGMv2_0674_6_17
Type: CAZyme
Location: 23751 - 25883 (-)
Gene ID: HRGMv2_0674_6_18
Type: pfam
Location: 25941 - 26792 (-)
Gene ID: HRGMv2_0674_6_19
Type: TC
Location: 27103 - 28065 (+)
Gene ID: HRGMv2_0674_6_20
Type: TC
Location: 28096 - 28974 (+)
Gene ID: HRGMv2_0674_6_21
Type:
Location: 29048 - 30763 (+)
Gene ID: HRGMv2_0674_6_22
Type: TF
Location: 30946 - 32547 (+)
Gene ID: HRGMv2_0674_6_23
Type: TC
Location: 32544 - 34322 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0674_6_22 vegetarian > vegan 1.34068 0.00229

🧭 Explore Read Mapping of CGC

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