Cluster: HRGMv2_0673_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0673
- CGC Family ID: CGCFAM_00246
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0673_2 | HRGMv2_0673_2_2 | 1647 | 2627 | + | 3.A.1.1.10 |
| TC | HRGMv2_0673_2 | HRGMv2_0673_2_3 | 2641 | 3561 | + | 3.A.1.1.29 |
| STP | HRGMv2_0673_2 | HRGMv2_0673_2_4 | 3590 | 5005 | + | SBP_bac_1 |
| CAZyme | HRGMv2_0673_2 | HRGMv2_0673_2_5 | 5196 | 6185 | + | GH130_2 |
| CAZyme | HRGMv2_0673_2 | HRGMv2_0673_2_6 | 6202 | 9300 | + | GH38 |
| CAZyme | HRGMv2_0673_2 | HRGMv2_0673_2_7 | 9306 | 11144 | + | GH20 |
Gene ID: HRGMv2_0673_2_2
Type: TC
Location: 1647 - 2627 (+)
Type: TC
Location: 1647 - 2627 (+)
Gene ID: HRGMv2_0673_2_3
Type: TC
Location: 2641 - 3561 (+)
Type: TC
Location: 2641 - 3561 (+)
Gene ID: HRGMv2_0673_2_4
Type: STP
Location: 3590 - 5005 (+)
Type: STP
Location: 3590 - 5005 (+)
Gene ID: HRGMv2_0673_2_5
Type: CAZyme
Location: 5196 - 6185 (+)
Type: CAZyme
Location: 5196 - 6185 (+)
Gene ID: HRGMv2_0673_2_6
Type: CAZyme
Location: 6202 - 9300 (+)
Type: CAZyme
Location: 6202 - 9300 (+)
Gene ID: HRGMv2_0673_2_7
Type: CAZyme
Location: 9306 - 11144 (+)
Type: CAZyme
Location: 9306 - 11144 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
SFMI01
Species
SFMI01 sp004556155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0673_2_2 | vegetarian > vegan | 1.07606 | 0.00136 |
| HRGMv2_0673_2_7 | vegetarian > vegan | 2.02349 | 0.00136 |