Cluster: HRGMv2_0673_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_0673
- CGC Family ID: CGCFAM_00037
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0673_25 | HRGMv2_0673_25_4 | 2990 | 4666 | + | GH13_20 |
| pfam | HRGMv2_0673_25 | HRGMv2_0673_25_5 | 4670 | 6136 | + | SBP_bac_1 | SBP_bac_8 |
| TC | HRGMv2_0673_25 | HRGMv2_0673_25_6 | 6167 | 7546 | + | 3.A.1.1.27 |
| TC | HRGMv2_0673_25 | HRGMv2_0673_25_7 | 7543 | 8418 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_0673_25 | HRGMv2_0673_25_8 | 8473 | 9960 | + | GH13_36 |
Gene ID: HRGMv2_0673_25_4
Type: CAZyme
Location: 2990 - 4666 (+)
Type: CAZyme
Location: 2990 - 4666 (+)
Gene ID: HRGMv2_0673_25_5
Type: pfam
Location: 4670 - 6136 (+)
Type: pfam
Location: 4670 - 6136 (+)
Gene ID: HRGMv2_0673_25_6
Type: TC
Location: 6167 - 7546 (+)
Type: TC
Location: 6167 - 7546 (+)
Gene ID: HRGMv2_0673_25_7
Type: TC
Location: 7543 - 8418 (+)
Type: TC
Location: 7543 - 8418 (+)
Gene ID: HRGMv2_0673_25_8
Type: CAZyme
Location: 8473 - 9960 (+)
Type: CAZyme
Location: 8473 - 9960 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
SFMI01
Species
SFMI01 sp004556155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0673_25_4 | vegetarian > vegan | 5.83010 | 0.00136 |
| HRGMv2_0673_25_5 | vegetarian > vegan | 2.56282 | 0.00136 |
| HRGMv2_0673_25_6 | vegetarian > vegan | 1.49106 | 0.00136 |
| HRGMv2_0673_25_7 | vegetarian > vegan | 2.84075 | 0.00136 |
| HRGMv2_0673_25_8 | vegetarian > vegan | 4.27395 | 0.00136 |