Cluster: HRGMv2_0673_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0673
- CGC Family ID: CGCFAM_01203
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0673_21 | HRGMv2_0673_21_10 | 10495 | 12207 | + | 3.A.1.135.7 |
| TC | HRGMv2_0673_21 | HRGMv2_0673_21_11 | 12204 | 14042 | + | 3.A.1.135.5 |
| NULL(UNKNOWN) | HRGMv2_0673_21 | HRGMv2_0673_21_12 | 14412 | 16028 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0673_21 | HRGMv2_0673_21_13 | 16176 | 16817 | + | His_Phos_1 |
| CAZyme | HRGMv2_0673_21 | HRGMv2_0673_21_14 | 16832 | 18103 | + | GT4 |
Gene ID: HRGMv2_0673_21_10
Type: TC
Location: 10495 - 12207 (+)
Type: TC
Location: 10495 - 12207 (+)
Gene ID: HRGMv2_0673_21_11
Type: TC
Location: 12204 - 14042 (+)
Type: TC
Location: 12204 - 14042 (+)
Gene ID: HRGMv2_0673_21_12
Type:
Location: 14412 - 16028 (+)
Type:
Location: 14412 - 16028 (+)
Gene ID: HRGMv2_0673_21_13
Type: pfam
Location: 16176 - 16817 (+)
Type: pfam
Location: 16176 - 16817 (+)
Gene ID: HRGMv2_0673_21_14
Type: CAZyme
Location: 16832 - 18103 (+)
Type: CAZyme
Location: 16832 - 18103 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
SFMI01
Species
SFMI01 sp004556155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0673_21_10 | vegetarian > vegan | 4.88583 | 0.00136 |
| HRGMv2_0673_21_12 | vegetarian > vegan | 2.40263 | 0.00136 |
| HRGMv2_0673_21_13 | vegetarian > vegan | 4.64679 | 0.00136 |
| HRGMv2_0673_21_14 | vegetarian > vegan | 3.48232 | 0.00136 |