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Cluster: HRGMv2_0673_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0673_7 HRGMv2_0673_7_66 63492 65333 + GH66
TC HRGMv2_0673_7 HRGMv2_0673_7_67 65364 66566 + 3.A.1.1.33
TC HRGMv2_0673_7 HRGMv2_0673_7_68 66654 67610 + 3.A.1.1.32
TC HRGMv2_0673_7 HRGMv2_0673_7_69 67607 68452 + 3.A.1.1.36
pfam HRGMv2_0673_7 HRGMv2_0673_7_70 68468 70246 + Glyco_hydro_125
CAZyme HRGMv2_0673_7 HRGMv2_0673_7_71 70360 71745 + GH28
TF HRGMv2_0673_7 HRGMv2_0673_7_72 71758 72798 + LacI
TC HRGMv2_0673_7 HRGMv2_0673_7_73 72955 73881 + 3.A.1.1.10
TC HRGMv2_0673_7 HRGMv2_0673_7_74 73902 74816 + 3.A.1.1.10
STP HRGMv2_0673_7 HRGMv2_0673_7_75 74873 76405 + SBP_bac_1
CAZyme HRGMv2_0673_7 HRGMv2_0673_7_76 76673 79054 + GH31_15
pfam HRGMv2_0673_7 HRGMv2_0673_7_77 79243 80001 + RDD
TC HRGMv2_0673_7 HRGMv2_0673_7_78 80036 81139 + 3.A.1.1.38
TC HRGMv2_0673_7 HRGMv2_0673_7_79 81141 82082 + 3.A.1.1.4
TC HRGMv2_0673_7 HRGMv2_0673_7_80 82094 82984 + 3.A.1.1.34
Gene ID: HRGMv2_0673_7_66
Type: CAZyme
Location: 63492 - 65333 (+)
Gene ID: HRGMv2_0673_7_67
Type: TC
Location: 65364 - 66566 (+)
Gene ID: HRGMv2_0673_7_68
Type: TC
Location: 66654 - 67610 (+)
Gene ID: HRGMv2_0673_7_69
Type: TC
Location: 67607 - 68452 (+)
Gene ID: HRGMv2_0673_7_70
Type: pfam
Location: 68468 - 70246 (+)
Gene ID: HRGMv2_0673_7_71
Type: CAZyme
Location: 70360 - 71745 (+)
Gene ID: HRGMv2_0673_7_72
Type: TF
Location: 71758 - 72798 (+)
Gene ID: HRGMv2_0673_7_73
Type: TC
Location: 72955 - 73881 (+)
Gene ID: HRGMv2_0673_7_74
Type: TC
Location: 73902 - 74816 (+)
Gene ID: HRGMv2_0673_7_75
Type: STP
Location: 74873 - 76405 (+)
Gene ID: HRGMv2_0673_7_76
Type: CAZyme
Location: 76673 - 79054 (+)
Gene ID: HRGMv2_0673_7_77
Type: pfam
Location: 79243 - 80001 (+)
Gene ID: HRGMv2_0673_7_78
Type: TC
Location: 80036 - 81139 (+)
Gene ID: HRGMv2_0673_7_79
Type: TC
Location: 81141 - 82082 (+)
Gene ID: HRGMv2_0673_7_80
Type: TC
Location: 82094 - 82984 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0673_7_66 vegetarian > vegan 3.60877 0.00136
HRGMv2_0673_7_67 vegetarian > vegan 1.31027 0.00136
HRGMv2_0673_7_68 vegetarian > vegan 2.67003 0.00136
HRGMv2_0673_7_69 vegetarian > vegan 1.60560 0.00136
HRGMv2_0673_7_70 vegetarian > vegan 1.16599 0.00136
HRGMv2_0673_7_71 vegetarian > vegan 5.54830 0.00136
HRGMv2_0673_7_72 vegetarian > vegan 4.52687 0.00136
HRGMv2_0673_7_73 vegetarian > vegan 3.44054 0.00136
HRGMv2_0673_7_74 vegetarian > vegan 4.29449 0.00136
HRGMv2_0673_7_75 vegetarian > vegan 16.91404 0.00136
HRGMv2_0673_7_76 vegetarian > vegan 1.94727 0.00136
HRGMv2_0673_7_77 vegetarian > vegan 3.45653 0.00136

🧭 Explore Read Mapping of CGC

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