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Cluster: HRGMv2_0668_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0668_6 HRGMv2_0668_6_27 27847 28626 + 9.B.149.1.11
pfam HRGMv2_0668_6 HRGMv2_0668_6_28 28630 29445 + SMC_ScpA
pfam HRGMv2_0668_6 HRGMv2_0668_6_29 29471 30058 + SMC_ScpB
TC HRGMv2_0668_6 HRGMv2_0668_6_30 30131 30577 + 1.A.22.1.3
STP HRGMv2_0668_6 HRGMv2_0668_6_31 31558 32205 - HhH-GPD
STP HRGMv2_0668_6 HRGMv2_0668_6_32 32219 33799 - SBP_bac_5
CAZyme HRGMv2_0668_6 HRGMv2_0668_6_33 33811 34665 - GH23
Gene ID: HRGMv2_0668_6_27
Type: TC
Location: 27847 - 28626 (+)
Gene ID: HRGMv2_0668_6_28
Type: pfam
Location: 28630 - 29445 (+)
Gene ID: HRGMv2_0668_6_29
Type: pfam
Location: 29471 - 30058 (+)
Gene ID: HRGMv2_0668_6_30
Type: TC
Location: 30131 - 30577 (+)
Gene ID: HRGMv2_0668_6_31
Type: STP
Location: 31558 - 32205 (-)
Gene ID: HRGMv2_0668_6_32
Type: STP
Location: 32219 - 33799 (-)
Gene ID: HRGMv2_0668_6_33
Type: CAZyme
Location: 33811 - 34665 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_6_32 vegan > omnivore 1.13543 0.01389

🧭 Explore Read Mapping of CGC

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