Cluster: HRGMv2_0668_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0668
- CGC Family ID: CGCFAM_05117
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0668_5 | HRGMv2_0668_5_63 | 69703 | 71148 | - | 2.A.37.3.3 |
| CAZyme | HRGMv2_0668_5 | HRGMv2_0668_5_64 | 71464 | 72345 | + | GT2 |
| STP | HRGMv2_0668_5 | HRGMv2_0668_5_65 | 72486 | 73694 | + | Aminotran_1_2 |
| sulfatase | HRGMv2_0668_5 | HRGMv2_0668_5_66 | 74232 | 75293 | - | S1_4 |
| TC | HRGMv2_0668_5 | HRGMv2_0668_5_67 | 75391 | 76269 | - | 3.A.1.1.20 |
| TC | HRGMv2_0668_5 | HRGMv2_0668_5_68 | 76287 | 77630 | - | 3.A.1.1.34 |
| STP | HRGMv2_0668_5 | HRGMv2_0668_5_69 | 77752 | 78981 | - | SBP_bac_1 |
| CAZyme | HRGMv2_0668_5 | HRGMv2_0668_5_70 | 79040 | 80845 | - | GH2 |
| TF | HRGMv2_0668_5 | HRGMv2_0668_5_71 | 81251 | 82204 | - | HTH_5 |
| pfam | HRGMv2_0668_5 | HRGMv2_0668_5_72 | 82387 | 83556 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| CAZyme | HRGMv2_0668_5 | HRGMv2_0668_5_73 | 83564 | 84739 | + | GH109 |
| CAZyme | HRGMv2_0668_5 | HRGMv2_0668_5_74 | 84759 | 85712 | + | GH43_33 |
Gene ID: HRGMv2_0668_5_63
Type: TC
Location: 69703 - 71148 (-)
Type: TC
Location: 69703 - 71148 (-)
Gene ID: HRGMv2_0668_5_64
Type: CAZyme
Location: 71464 - 72345 (+)
Type: CAZyme
Location: 71464 - 72345 (+)
Gene ID: HRGMv2_0668_5_65
Type: STP
Location: 72486 - 73694 (+)
Type: STP
Location: 72486 - 73694 (+)
Gene ID: HRGMv2_0668_5_66
Type: sulfatase
Location: 74232 - 75293 (-)
Type: sulfatase
Location: 74232 - 75293 (-)
Gene ID: HRGMv2_0668_5_67
Type: TC
Location: 75391 - 76269 (-)
Type: TC
Location: 75391 - 76269 (-)
Gene ID: HRGMv2_0668_5_68
Type: TC
Location: 76287 - 77630 (-)
Type: TC
Location: 76287 - 77630 (-)
Gene ID: HRGMv2_0668_5_69
Type: STP
Location: 77752 - 78981 (-)
Type: STP
Location: 77752 - 78981 (-)
Gene ID: HRGMv2_0668_5_70
Type: CAZyme
Location: 79040 - 80845 (-)
Type: CAZyme
Location: 79040 - 80845 (-)
Gene ID: HRGMv2_0668_5_71
Type: TF
Location: 81251 - 82204 (-)
Type: TF
Location: 81251 - 82204 (-)
Gene ID: HRGMv2_0668_5_72
Type: pfam
Location: 82387 - 83556 (+)
Type: pfam
Location: 82387 - 83556 (+)
Gene ID: HRGMv2_0668_5_73
Type: CAZyme
Location: 83564 - 84739 (+)
Type: CAZyme
Location: 83564 - 84739 (+)
Gene ID: HRGMv2_0668_5_74
Type: CAZyme
Location: 84759 - 85712 (+)
Type: CAZyme
Location: 84759 - 85712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Ventricola
Species
Ventricola sp900548125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0668_5_64 | vegan > omnivore | 1.82478 | 0.01579 |
| HRGMv2_0668_5_67 | vegan > omnivore | 1.09482 | 0.01579 |
| HRGMv2_0668_5_68 | vegan > omnivore | 1.23272 | 0.01579 |
| HRGMv2_0668_5_70 | vegan > omnivore | 1.25332 | 0.01579 |
| HRGMv2_0668_5_71 | vegan > omnivore | 1.89407 | 0.01579 |