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Cluster: HRGMv2_0668_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0668_4 HRGMv2_0668_4_103 113565 115106 - 3.A.1.120.1
TF HRGMv2_0668_4 HRGMv2_0668_4_104 115743 116240 + MarR
TC HRGMv2_0668_4 HRGMv2_0668_4_105 116233 118035 + 3.A.1.135.5
TC HRGMv2_0668_4 HRGMv2_0668_4_106 118038 119939 + 3.A.1.135.5
NULL(UNKNOWN) HRGMv2_0668_4 HRGMv2_0668_4_107 120494 121051 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0668_4 HRGMv2_0668_4_108 121038 121985 + HTH_AraC
TC HRGMv2_0668_4 HRGMv2_0668_4_109 122202 123455 + 3.A.1.1.4
TC HRGMv2_0668_4 HRGMv2_0668_4_110 123551 124465 + 3.A.1.1.4
TC HRGMv2_0668_4 HRGMv2_0668_4_111 124462 125289 + 3.A.1.1.4
CAZyme HRGMv2_0668_4 HRGMv2_0668_4_112 125377 128424 + GH2
Gene ID: HRGMv2_0668_4_103
Type: TC
Location: 113565 - 115106 (-)
Gene ID: HRGMv2_0668_4_104
Type: TF
Location: 115743 - 116240 (+)
Gene ID: HRGMv2_0668_4_105
Type: TC
Location: 116233 - 118035 (+)
Gene ID: HRGMv2_0668_4_106
Type: TC
Location: 118038 - 119939 (+)
Gene ID: HRGMv2_0668_4_107
Type:
Location: 120494 - 121051 (+)
Gene ID: HRGMv2_0668_4_108
Type: TF
Location: 121038 - 121985 (+)
Gene ID: HRGMv2_0668_4_109
Type: TC
Location: 122202 - 123455 (+)
Gene ID: HRGMv2_0668_4_110
Type: TC
Location: 123551 - 124465 (+)
Gene ID: HRGMv2_0668_4_111
Type: TC
Location: 124462 - 125289 (+)
Gene ID: HRGMv2_0668_4_112
Type: CAZyme
Location: 125377 - 128424 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_4_103 vegan > omnivore 1.28855 0.01460

🧭 Explore Read Mapping of CGC

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