Cluster: HRGMv2_0668_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0668
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0668_2 | HRGMv2_0668_2_45 | 48419 | 49663 | + | 3.A.1.1.40 |
| TC | HRGMv2_0668_2 | HRGMv2_0668_2_46 | 49822 | 50760 | + | 3.A.1.1.20 |
| TC | HRGMv2_0668_2 | HRGMv2_0668_2_47 | 50775 | 51644 | + | 3.A.1.1.39 |
| CAZyme | HRGMv2_0668_2 | HRGMv2_0668_2_48 | 51646 | 53451 | + | PL33_1 |
| CAZyme | HRGMv2_0668_2 | HRGMv2_0668_2_49 | 53570 | 55390 | + | GH154 |
| CAZyme | HRGMv2_0668_2 | HRGMv2_0668_2_50 | 55374 | 56495 | + | GH88 |
Gene ID: HRGMv2_0668_2_45
Type: TC
Location: 48419 - 49663 (+)
Type: TC
Location: 48419 - 49663 (+)
Gene ID: HRGMv2_0668_2_46
Type: TC
Location: 49822 - 50760 (+)
Type: TC
Location: 49822 - 50760 (+)
Gene ID: HRGMv2_0668_2_47
Type: TC
Location: 50775 - 51644 (+)
Type: TC
Location: 50775 - 51644 (+)
Gene ID: HRGMv2_0668_2_48
Type: CAZyme
Location: 51646 - 53451 (+)
Type: CAZyme
Location: 51646 - 53451 (+)
Gene ID: HRGMv2_0668_2_49
Type: CAZyme
Location: 53570 - 55390 (+)
Type: CAZyme
Location: 53570 - 55390 (+)
Gene ID: HRGMv2_0668_2_50
Type: CAZyme
Location: 55374 - 56495 (+)
Type: CAZyme
Location: 55374 - 56495 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Ventricola
Species
Ventricola sp900548125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0668_2_46 | vegan > omnivore | 1.05348 | 0.01579 |
| HRGMv2_0668_2_48 | vegan > omnivore | 1.28893 | 0.01579 |
| HRGMv2_0668_2_49 | vegan > omnivore | 1.23930 | 0.01579 |
| HRGMv2_0668_2_50 | vegan > omnivore | 1.34916 | 0.01579 |