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Cluster: HRGMv2_0668_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0668_31 HRGMv2_0668_31_11 12916 13812 + 3.A.1.4.10
TC HRGMv2_0668_31 HRGMv2_0668_31_12 13816 14889 + 3.A.1.4.10
TC HRGMv2_0668_31 HRGMv2_0668_31_13 14882 15661 + 3.A.1.4.10
TC HRGMv2_0668_31 HRGMv2_0668_31_14 15651 16364 + 3.A.1.4.10
pfam HRGMv2_0668_31 HRGMv2_0668_31_15 16665 17684 + PNP_UDP_1 | NUP
TC HRGMv2_0668_31 HRGMv2_0668_31_16 17896 18705 - 3.A.1.34.1
TC HRGMv2_0668_31 HRGMv2_0668_31_17 18698 19621 - 3.A.1.34.1
pfam HRGMv2_0668_31 HRGMv2_0668_31_18 19708 20640 - ABC_sub_bind
CAZyme HRGMv2_0668_31 HRGMv2_0668_31_19 20949 21965 - GT2
NULL(UNKNOWN) HRGMv2_0668_31 HRGMv2_0668_31_20 21999 22727 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0668_31 HRGMv2_0668_31_21 22868 24862 - GH3
Gene ID: HRGMv2_0668_31_11
Type: TC
Location: 12916 - 13812 (+)
Gene ID: HRGMv2_0668_31_12
Type: TC
Location: 13816 - 14889 (+)
Gene ID: HRGMv2_0668_31_13
Type: TC
Location: 14882 - 15661 (+)
Gene ID: HRGMv2_0668_31_14
Type: TC
Location: 15651 - 16364 (+)
Gene ID: HRGMv2_0668_31_15
Type: pfam
Location: 16665 - 17684 (+)
Gene ID: HRGMv2_0668_31_16
Type: TC
Location: 17896 - 18705 (-)
Gene ID: HRGMv2_0668_31_17
Type: TC
Location: 18698 - 19621 (-)
Gene ID: HRGMv2_0668_31_18
Type: pfam
Location: 19708 - 20640 (-)
Gene ID: HRGMv2_0668_31_19
Type: CAZyme
Location: 20949 - 21965 (-)
Gene ID: HRGMv2_0668_31_20
Type:
Location: 21999 - 22727 (-)
Gene ID: HRGMv2_0668_31_21
Type: CAZyme
Location: 22868 - 24862 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_31_20 vegan > omnivore 1.07459 0.01579
HRGMv2_0668_31_21 vegetarian > vegan 1.30952 0.03132

🧭 Explore Read Mapping of CGC

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