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Cluster: HRGMv2_0668_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0668_27 HRGMv2_0668_27_15 11568 13382 - 9.B.33.1.1
STP HRGMv2_0668_27 HRGMv2_0668_27_16 13623 14066 + SBP_bac_1
STP HRGMv2_0668_27 HRGMv2_0668_27_17 14106 14837 + SBP_bac_1
TC HRGMv2_0668_27 HRGMv2_0668_27_18 14926 15837 + 3.A.1.1.28
TC HRGMv2_0668_27 HRGMv2_0668_27_19 15839 16669 + 3.A.1.1.28
pfam HRGMv2_0668_27 HRGMv2_0668_27_20 16650 17492 + Exo_endo_phos
CAZyme HRGMv2_0668_27 HRGMv2_0668_27_21 17524 19197 + GH13_31
Gene ID: HRGMv2_0668_27_15
Type: TC
Location: 11568 - 13382 (-)
Gene ID: HRGMv2_0668_27_16
Type: STP
Location: 13623 - 14066 (+)
Gene ID: HRGMv2_0668_27_17
Type: STP
Location: 14106 - 14837 (+)
Gene ID: HRGMv2_0668_27_18
Type: TC
Location: 14926 - 15837 (+)
Gene ID: HRGMv2_0668_27_19
Type: TC
Location: 15839 - 16669 (+)
Gene ID: HRGMv2_0668_27_20
Type: pfam
Location: 16650 - 17492 (+)
Gene ID: HRGMv2_0668_27_21
Type: CAZyme
Location: 17524 - 19197 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_27_21 vegan > omnivore 2.10080 0.01579

🧭 Explore Read Mapping of CGC

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