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Cluster: HRGMv2_0668_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0668_1 HRGMv2_0668_1_272 296834 297874 - GH179
TC HRGMv2_0668_1 HRGMv2_0668_1_273 297890 298927 - 3.A.1.2.15
TC HRGMv2_0668_1 HRGMv2_0668_1_274 298953 300431 - 3.A.1.2.20
STP HRGMv2_0668_1 HRGMv2_0668_1_275 300531 301466 - Peripla_BP_1
TC HRGMv2_0668_1 HRGMv2_0668_1_276 301845 302996 + 2.A.66.1.37
NULL(UNKNOWN) HRGMv2_0668_1 HRGMv2_0668_1_277 303088 303534 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_0668_1 HRGMv2_0668_1_278 303796 304770 + C59.951
TC HRGMv2_0668_1 HRGMv2_0668_1_279 305080 307449 + 8.A.59.4.2
pfam HRGMv2_0668_1 HRGMv2_0668_1_280 307507 307857 + Hpt
pfam HRGMv2_0668_1 HRGMv2_0668_1_281 307994 308722 - CpsB_CapC
TC HRGMv2_0668_1 HRGMv2_0668_1_282 308715 309437 - 8.A.3.2.2
Gene ID: HRGMv2_0668_1_272
Type: CAZyme
Location: 296834 - 297874 (-)
Gene ID: HRGMv2_0668_1_273
Type: TC
Location: 297890 - 298927 (-)
Gene ID: HRGMv2_0668_1_274
Type: TC
Location: 298953 - 300431 (-)
Gene ID: HRGMv2_0668_1_275
Type: STP
Location: 300531 - 301466 (-)
Gene ID: HRGMv2_0668_1_276
Type: TC
Location: 301845 - 302996 (+)
Gene ID: HRGMv2_0668_1_277
Type:
Location: 303088 - 303534 (-)
Gene ID: HRGMv2_0668_1_278
Type: peptidase
Location: 303796 - 304770 (+)
Gene ID: HRGMv2_0668_1_279
Type: TC
Location: 305080 - 307449 (+)
Gene ID: HRGMv2_0668_1_280
Type: pfam
Location: 307507 - 307857 (+)
Gene ID: HRGMv2_0668_1_281
Type: pfam
Location: 307994 - 308722 (-)
Gene ID: HRGMv2_0668_1_282
Type: TC
Location: 308715 - 309437 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_1_282 vegan > omnivore 1.09189 0.01579

🧭 Explore Read Mapping of CGC

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