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Cluster: HRGMv2_0668_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0668_8 HRGMv2_0668_8_60 69193 70221 + GT2
CAZyme HRGMv2_0668_8 HRGMv2_0668_8_61 70218 71348 + GT4
CAZyme HRGMv2_0668_8 HRGMv2_0668_8_62 71464 72660 + GT4
pfam HRGMv2_0668_8 HRGMv2_0668_8_63 72641 73951 + Wzy_C
CAZyme HRGMv2_0668_8 HRGMv2_0668_8_64 74087 75109 + GT2
TC HRGMv2_0668_8 HRGMv2_0668_8_65 75106 75783 + 9.B.18.1.2
Gene ID: HRGMv2_0668_8_60
Type: CAZyme
Location: 69193 - 70221 (+)
Gene ID: HRGMv2_0668_8_61
Type: CAZyme
Location: 70218 - 71348 (+)
Gene ID: HRGMv2_0668_8_62
Type: CAZyme
Location: 71464 - 72660 (+)
Gene ID: HRGMv2_0668_8_63
Type: pfam
Location: 72641 - 73951 (+)
Gene ID: HRGMv2_0668_8_64
Type: CAZyme
Location: 74087 - 75109 (+)
Gene ID: HRGMv2_0668_8_65
Type: TC
Location: 75106 - 75783 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_8_61 vegan > omnivore 1.09127 0.01579

🧭 Explore Read Mapping of CGC

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