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Cluster: HRGMv2_0668_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0668_1 HRGMv2_0668_1_203 211601 214696 - GH38
STP HRGMv2_0668_1 HRGMv2_0668_1_204 214980 216725 + HATPase_c
TF HRGMv2_0668_1 HRGMv2_0668_1_205 216779 217822 + HTH_AraC
TC HRGMv2_0668_1 HRGMv2_0668_1_206 218019 219302 + 3.A.1.1.40
STP HRGMv2_0668_1 HRGMv2_0668_1_207 219357 220640 + SBP_bac_1
TC HRGMv2_0668_1 HRGMv2_0668_1_208 220740 221663 + 3.A.1.1.11
TC HRGMv2_0668_1 HRGMv2_0668_1_209 221669 222529 + 3.A.1.1.11
Gene ID: HRGMv2_0668_1_203
Type: CAZyme
Location: 211601 - 214696 (-)
Gene ID: HRGMv2_0668_1_204
Type: STP
Location: 214980 - 216725 (+)
Gene ID: HRGMv2_0668_1_205
Type: TF
Location: 216779 - 217822 (+)
Gene ID: HRGMv2_0668_1_206
Type: TC
Location: 218019 - 219302 (+)
Gene ID: HRGMv2_0668_1_207
Type: STP
Location: 219357 - 220640 (+)
Gene ID: HRGMv2_0668_1_208
Type: TC
Location: 220740 - 221663 (+)
Gene ID: HRGMv2_0668_1_209
Type: TC
Location: 221669 - 222529 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0668_1_205 vegan > omnivore 1.21071 0.01579
HRGMv2_0668_1_207 vegan > omnivore 2.20474 0.01579

🧭 Explore Read Mapping of CGC

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