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Cluster: HRGMv2_0667_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0667_7 HRGMv2_0667_7_40 41349 42677 - GH1
TC HRGMv2_0667_7 HRGMv2_0667_7_41 42674 43525 - 3.A.1.1.18
TC HRGMv2_0667_7 HRGMv2_0667_7_42 43527 44417 - 3.A.1.1.37
TC HRGMv2_0667_7 HRGMv2_0667_7_43 44557 45810 - 3.A.1.1.21
NULL(UNKNOWN) HRGMv2_0667_7 HRGMv2_0667_7_44 46698 46910 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0667_7 HRGMv2_0667_7_45 47074 48051 + 2.A.56.1.5
pfam HRGMv2_0667_7 HRGMv2_0667_7_46 48215 48733 + DctQ
TC HRGMv2_0667_7 HRGMv2_0667_7_47 48730 50022 + 2.A.56.1.5
Gene ID: HRGMv2_0667_7_40
Type: CAZyme
Location: 41349 - 42677 (-)
Gene ID: HRGMv2_0667_7_41
Type: TC
Location: 42674 - 43525 (-)
Gene ID: HRGMv2_0667_7_42
Type: TC
Location: 43527 - 44417 (-)
Gene ID: HRGMv2_0667_7_43
Type: TC
Location: 44557 - 45810 (-)
Gene ID: HRGMv2_0667_7_44
Type:
Location: 46698 - 46910 (+)
Gene ID: HRGMv2_0667_7_45
Type: TC
Location: 47074 - 48051 (+)
Gene ID: HRGMv2_0667_7_46
Type: pfam
Location: 48215 - 48733 (+)
Gene ID: HRGMv2_0667_7_47
Type: TC
Location: 48730 - 50022 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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