Cluster: HRGMv2_0653_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0653
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0653_18 | HRGMv2_0653_18_28 | 23502 | 25112 | - | 3.A.1.121.4 |
| NULL(UNKNOWN) | HRGMv2_0653_18 | HRGMv2_0653_18_29 | 25242 | 25376 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0653_18 | HRGMv2_0653_18_30 | 25348 | 26244 | + | GT11 |
| STP | HRGMv2_0653_18 | HRGMv2_0653_18_31 | 26402 | 27778 | + | Fer4 |
| TC | HRGMv2_0653_18 | HRGMv2_0653_18_32 | 27906 | 28598 | + | 1.A.14.2.2 |
Gene ID: HRGMv2_0653_18_28
Type: TC
Location: 23502 - 25112 (-)
Type: TC
Location: 23502 - 25112 (-)
Gene ID: HRGMv2_0653_18_29
Type:
Location: 25242 - 25376 (+)
Type:
Location: 25242 - 25376 (+)
Gene ID: HRGMv2_0653_18_30
Type: CAZyme
Location: 25348 - 26244 (+)
Type: CAZyme
Location: 25348 - 26244 (+)
Gene ID: HRGMv2_0653_18_31
Type: STP
Location: 26402 - 27778 (+)
Type: STP
Location: 26402 - 27778 (+)
Gene ID: HRGMv2_0653_18_32
Type: TC
Location: 27906 - 28598 (+)
Type: TC
Location: 27906 - 28598 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_C
Species
Helicobacter_C cinaedi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.