Cluster: HRGMv2_0653_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0653
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0653_1 | HRGMv2_0653_1_1 | 1 | 1311 | + | 2.A.22.5.3 |
| peptidase | HRGMv2_0653_1 | HRGMv2_0653_1_2 | 1320 | 2465 | - | C26.UPW |
| pfam | HRGMv2_0653_1 | HRGMv2_0653_1_3 | 2462 | 3013 | - | DUF507 |
| CAZyme | HRGMv2_0653_1 | HRGMv2_0653_1_4 | 3077 | 5089 | - | GT51 |
| TC | HRGMv2_0653_1 | HRGMv2_0653_1_5 | 5123 | 6505 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_0653_1_1
Type: TC
Location: 1 - 1311 (+)
Type: TC
Location: 1 - 1311 (+)
Gene ID: HRGMv2_0653_1_2
Type: peptidase
Location: 1320 - 2465 (-)
Type: peptidase
Location: 1320 - 2465 (-)
Gene ID: HRGMv2_0653_1_3
Type: pfam
Location: 2462 - 3013 (-)
Type: pfam
Location: 2462 - 3013 (-)
Gene ID: HRGMv2_0653_1_4
Type: CAZyme
Location: 3077 - 5089 (-)
Type: CAZyme
Location: 3077 - 5089 (-)
Gene ID: HRGMv2_0653_1_5
Type: TC
Location: 5123 - 6505 (-)
Type: TC
Location: 5123 - 6505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_C
Species
Helicobacter_C cinaedi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.