Cluster: HRGMv2_0626_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0626
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0626_35 | HRGMv2_0626_35_1 | 2 | 544 | - | GT2 |
| TC | HRGMv2_0626_35 | HRGMv2_0626_35_2 | 790 | 2817 | + | 2.A.37.1.5 |
| TC | HRGMv2_0626_35 | HRGMv2_0626_35_3 | 2909 | 3556 | - | 1.A.62.2.1 |
| pfam | HRGMv2_0626_35 | HRGMv2_0626_35_4 | 3808 | 5082 | + | AAA_15 | AAA_21 |
| pfam | HRGMv2_0626_35 | HRGMv2_0626_35_5 | 5086 | 5745 | + | RloB |
| TC | HRGMv2_0626_35 | HRGMv2_0626_35_6 | 5986 | 9120 | - | 2.A.6.1.3 |
| TC | HRGMv2_0626_35 | HRGMv2_0626_35_7 | 9104 | 10462 | - | 2.A.6.1.4 |
Gene ID: HRGMv2_0626_35_1
Type: CAZyme
Location: 2 - 544 (-)
Type: CAZyme
Location: 2 - 544 (-)
Gene ID: HRGMv2_0626_35_2
Type: TC
Location: 790 - 2817 (+)
Type: TC
Location: 790 - 2817 (+)
Gene ID: HRGMv2_0626_35_3
Type: TC
Location: 2909 - 3556 (-)
Type: TC
Location: 2909 - 3556 (-)
Gene ID: HRGMv2_0626_35_4
Type: pfam
Location: 3808 - 5082 (+)
Type: pfam
Location: 3808 - 5082 (+)
Gene ID: HRGMv2_0626_35_5
Type: pfam
Location: 5086 - 5745 (+)
Type: pfam
Location: 5086 - 5745 (+)
Gene ID: HRGMv2_0626_35_6
Type: TC
Location: 5986 - 9120 (-)
Type: TC
Location: 5986 - 9120 (-)
Gene ID: HRGMv2_0626_35_7
Type: TC
Location: 9104 - 10462 (-)
Type: TC
Location: 9104 - 10462 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0626_35_2 | vegetarian > omnivore | 1.94619 | 0.00305 |
| HRGMv2_0626_35_2 | vegetarian > vegan | 1.00587 | 0.01867 |