Cluster: HRGMv2_0626_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0626
- CGC Family ID: CGCFAM_00429
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0626_23 | HRGMv2_0626_23_23 | 28768 | 29808 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_0626_23 | HRGMv2_0626_23_24 | 29969 | 30481 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0626_23 | HRGMv2_0626_23_25 | 30600 | 31790 | + | NAPRTase | NAPRTase_N |
| TC | HRGMv2_0626_23 | HRGMv2_0626_23_26 | 32027 | 33442 | + | 2.A.111.1.2 |
| TC | HRGMv2_0626_23 | HRGMv2_0626_23_27 | 33564 | 35147 | + | 3.A.1.17.10 |
Gene ID: HRGMv2_0626_23_23
Type: CAZyme
Location: 28768 - 29808 (+)
Type: CAZyme
Location: 28768 - 29808 (+)
Gene ID: HRGMv2_0626_23_24
Type:
Location: 29969 - 30481 (+)
Type:
Location: 29969 - 30481 (+)
Gene ID: HRGMv2_0626_23_25
Type: pfam
Location: 30600 - 31790 (+)
Type: pfam
Location: 30600 - 31790 (+)
Gene ID: HRGMv2_0626_23_26
Type: TC
Location: 32027 - 33442 (+)
Type: TC
Location: 32027 - 33442 (+)
Gene ID: HRGMv2_0626_23_27
Type: TC
Location: 33564 - 35147 (+)
Type: TC
Location: 33564 - 35147 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0626_23_26 | vegetarian > omnivore | 1.76945 | 0.00305 |