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Cluster: HRGMv2_0626_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0626_11 HRGMv2_0626_11_38 41926 43908 - 9.B.14.1.7
pfam HRGMv2_0626_11 HRGMv2_0626_11_39 44247 44753 - CcmE
pfam HRGMv2_0626_11 HRGMv2_0626_11_40 44781 44969 - CcmD
TC HRGMv2_0626_11 HRGMv2_0626_11_41 44966 45694 - 9.B.14.2.4
TC HRGMv2_0626_11 HRGMv2_0626_11_42 45752 46420 - 3.A.1.107.4
TC HRGMv2_0626_11 HRGMv2_0626_11_43 46440 47159 - 3.A.1.107.3
NULL(UNKNOWN) HRGMv2_0626_11 HRGMv2_0626_11_44 47520 47924 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0626_11 HRGMv2_0626_11_45 47957 49975 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH
TC HRGMv2_0626_11 HRGMv2_0626_11_46 49992 50636 + 4.F.1.1.8
pfam HRGMv2_0626_11 HRGMv2_0626_11_47 50701 53556 + DUF2157 | GDYXXLXY
CAZyme HRGMv2_0626_11 HRGMv2_0626_11_48 53553 54677 + GT104
Gene ID: HRGMv2_0626_11_38
Type: TC
Location: 41926 - 43908 (-)
Gene ID: HRGMv2_0626_11_39
Type: pfam
Location: 44247 - 44753 (-)
Gene ID: HRGMv2_0626_11_40
Type: pfam
Location: 44781 - 44969 (-)
Gene ID: HRGMv2_0626_11_41
Type: TC
Location: 44966 - 45694 (-)
Gene ID: HRGMv2_0626_11_42
Type: TC
Location: 45752 - 46420 (-)
Gene ID: HRGMv2_0626_11_43
Type: TC
Location: 46440 - 47159 (-)
Gene ID: HRGMv2_0626_11_44
Type:
Location: 47520 - 47924 (+)
Gene ID: HRGMv2_0626_11_45
Type: pfam
Location: 47957 - 49975 (+)
Gene ID: HRGMv2_0626_11_46
Type: TC
Location: 49992 - 50636 (+)
Gene ID: HRGMv2_0626_11_47
Type: pfam
Location: 50701 - 53556 (+)
Gene ID: HRGMv2_0626_11_48
Type: CAZyme
Location: 53553 - 54677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0626_11_39 vegetarian > omnivore 1.92272 0.00305
HRGMv2_0626_11_43 vegetarian > omnivore 1.72080 0.00305

🧭 Explore Read Mapping of CGC

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