Cluster: HRGMv2_0626_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0626
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0626_4 | HRGMv2_0626_4_59 | 67990 | 68988 | - | GH23 |
| pfam | HRGMv2_0626_4 | HRGMv2_0626_4_60 | 69404 | 69691 | + | KTSC |
| TC | HRGMv2_0626_4 | HRGMv2_0626_4_61 | 69761 | 71251 | - | 1.A.26.1.2 |
Gene ID: HRGMv2_0626_4_59
Type: CAZyme
Location: 67990 - 68988 (-)
Type: CAZyme
Location: 67990 - 68988 (-)
Gene ID: HRGMv2_0626_4_60
Type: pfam
Location: 69404 - 69691 (+)
Type: pfam
Location: 69404 - 69691 (+)
Gene ID: HRGMv2_0626_4_61
Type: TC
Location: 69761 - 71251 (-)
Type: TC
Location: 69761 - 71251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Sutterella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0626_4_59 | vegetarian > omnivore | 1.31968 | 0.00305 |
| HRGMv2_0626_4_59 | vegetarian > vegan | 1.10420 | 0.01867 |
| HRGMv2_0626_4_60 | vegetarian > omnivore | 1.58637 | 0.00305 |
| HRGMv2_0626_4_60 | vegetarian > vegan | 2.04990 | 0.01867 |