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Cluster: HRGMv2_0626_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0626_4 HRGMv2_0626_4_12 15981 17045 + GT9
TC HRGMv2_0626_4 HRGMv2_0626_4_13 17031 17981 - 2.A.7.3.19
TC HRGMv2_0626_4 HRGMv2_0626_4_14 18064 19821 - 3.A.1.106.1
pfam HRGMv2_0626_4 HRGMv2_0626_4_15 19955 21001 + Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_4
CAZyme HRGMv2_0626_4 HRGMv2_0626_4_16 21003 21938 + GT9
pfam HRGMv2_0626_4 HRGMv2_0626_4_17 21933 23594 - SMC_N | AAA_23
pfam HRGMv2_0626_4 HRGMv2_0626_4_18 23624 24532 - NAD_kinase | NAD_kinase_C
CAZyme HRGMv2_0626_4 HRGMv2_0626_4_19 24532 25293 - GT2
pfam HRGMv2_0626_4 HRGMv2_0626_4_20 25394 26185 - adh_short | adh_short_C2
CAZyme HRGMv2_0626_4 HRGMv2_0626_4_21 26311 28422 - GH23
Gene ID: HRGMv2_0626_4_12
Type: CAZyme
Location: 15981 - 17045 (+)
Gene ID: HRGMv2_0626_4_13
Type: TC
Location: 17031 - 17981 (-)
Gene ID: HRGMv2_0626_4_14
Type: TC
Location: 18064 - 19821 (-)
Gene ID: HRGMv2_0626_4_15
Type: pfam
Location: 19955 - 21001 (+)
Gene ID: HRGMv2_0626_4_16
Type: CAZyme
Location: 21003 - 21938 (+)
Gene ID: HRGMv2_0626_4_17
Type: pfam
Location: 21933 - 23594 (-)
Gene ID: HRGMv2_0626_4_18
Type: pfam
Location: 23624 - 24532 (-)
Gene ID: HRGMv2_0626_4_19
Type: CAZyme
Location: 24532 - 25293 (-)
Gene ID: HRGMv2_0626_4_20
Type: pfam
Location: 25394 - 26185 (-)
Gene ID: HRGMv2_0626_4_21
Type: CAZyme
Location: 26311 - 28422 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0626_4_18 vegetarian > omnivore 1.12950 0.00305

🧭 Explore Read Mapping of CGC

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