Cluster: HRGMv2_0623_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0623
- CGC Family ID: CGCFAM_00065
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0623_10 | HRGMv2_0623_10_25 | 28872 | 30635 | + | 3.A.1.106.1 |
| TC | HRGMv2_0623_10 | HRGMv2_0623_10_26 | 30638 | 32383 | + | 3.A.1.106.1 |
| CAZyme | HRGMv2_0623_10 | HRGMv2_0623_10_27 | 32463 | 33239 | - | GT25 |
| CAZyme | HRGMv2_0623_10 | HRGMv2_0623_10_28 | 33208 | 34362 | - | GT2 |
| CAZyme | HRGMv2_0623_10 | HRGMv2_0623_10_29 | 34532 | 35701 | + | GT4 |
| TC | HRGMv2_0623_10 | HRGMv2_0623_10_30 | 35771 | 36532 | + | 4.D.1.3.3 |
Gene ID: HRGMv2_0623_10_25
Type: TC
Location: 28872 - 30635 (+)
Type: TC
Location: 28872 - 30635 (+)
Gene ID: HRGMv2_0623_10_26
Type: TC
Location: 30638 - 32383 (+)
Type: TC
Location: 30638 - 32383 (+)
Gene ID: HRGMv2_0623_10_27
Type: CAZyme
Location: 32463 - 33239 (-)
Type: CAZyme
Location: 32463 - 33239 (-)
Gene ID: HRGMv2_0623_10_28
Type: CAZyme
Location: 33208 - 34362 (-)
Type: CAZyme
Location: 33208 - 34362 (-)
Gene ID: HRGMv2_0623_10_29
Type: CAZyme
Location: 34532 - 35701 (+)
Type: CAZyme
Location: 34532 - 35701 (+)
Gene ID: HRGMv2_0623_10_30
Type: TC
Location: 35771 - 36532 (+)
Type: TC
Location: 35771 - 36532 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Aphodousia
Species
Aphodousia sp019418235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.