Cluster: HRGMv2_0621_CGC9
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0621
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0621_4 | HRGMv2_0621_4_115 | 124936 | 127392 | - | GT35 |
| CAZyme | HRGMv2_0621_4 | HRGMv2_0621_4_116 | 127594 | 129078 | - | GT5 |
| pfam | HRGMv2_0621_4 | HRGMv2_0621_4_117 | 129079 | 130380 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_0621_4 | HRGMv2_0621_4_118 | 130568 | 132193 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III | PGM1_C_vert_fung |
| CAZyme | HRGMv2_0621_4 | HRGMv2_0621_4_119 | 132293 | 134335 | - | GH13_11 |
| CAZyme | HRGMv2_0621_4 | HRGMv2_0621_4_120 | 134335 | 136515 | - | CBM48 | GH13_9 |
| sulfatase | HRGMv2_0621_4 | HRGMv2_0621_4_121 | 136655 | 138334 | - | S1_6 |
| pfam | HRGMv2_0621_4 | HRGMv2_0621_4_122 | 138449 | 138868 | + | 4HBT | 4HBT_2 |
| TC | HRGMv2_0621_4 | HRGMv2_0621_4_123 | 139176 | 140393 | + | 2.A.1.2.7 |
Gene ID: HRGMv2_0621_4_115
Type: CAZyme
Location: 124936 - 127392 (-)
Type: CAZyme
Location: 124936 - 127392 (-)
Gene ID: HRGMv2_0621_4_116
Type: CAZyme
Location: 127594 - 129078 (-)
Type: CAZyme
Location: 127594 - 129078 (-)
Gene ID: HRGMv2_0621_4_117
Type: pfam
Location: 129079 - 130380 (-)
Type: pfam
Location: 129079 - 130380 (-)
Gene ID: HRGMv2_0621_4_118
Type: pfam
Location: 130568 - 132193 (-)
Type: pfam
Location: 130568 - 132193 (-)
Gene ID: HRGMv2_0621_4_119
Type: CAZyme
Location: 132293 - 134335 (-)
Type: CAZyme
Location: 132293 - 134335 (-)
Gene ID: HRGMv2_0621_4_120
Type: CAZyme
Location: 134335 - 136515 (-)
Type: CAZyme
Location: 134335 - 136515 (-)
Gene ID: HRGMv2_0621_4_121
Type: sulfatase
Location: 136655 - 138334 (-)
Type: sulfatase
Location: 136655 - 138334 (-)
Gene ID: HRGMv2_0621_4_122
Type: pfam
Location: 138449 - 138868 (+)
Type: pfam
Location: 138449 - 138868 (+)
Gene ID: HRGMv2_0621_4_123
Type: TC
Location: 139176 - 140393 (+)
Type: TC
Location: 139176 - 140393 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter aliiformigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0621_4_118 | vegetarian > vegan | 1.58424 | 0.04112 |
| HRGMv2_0621_4_122 | vegetarian > vegan | 1.22980 | 0.04112 |