Cluster: HRGMv2_0621_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0621
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0621_3 | HRGMv2_0621_3_77 | 85603 | 86772 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0621_3 | HRGMv2_0621_3_78 | 86774 | 88273 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_0621_3 | HRGMv2_0621_3_79 | 88270 | 89487 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0621_3 | HRGMv2_0621_3_80 | 89484 | 90569 | + | GT28 |
Gene ID: HRGMv2_0621_3_77
Type: TC
Location: 85603 - 86772 (+)
Type: TC
Location: 85603 - 86772 (+)
Gene ID: HRGMv2_0621_3_78
Type: pfam
Location: 86774 - 88273 (+)
Type: pfam
Location: 86774 - 88273 (+)
Gene ID: HRGMv2_0621_3_79
Type: TC
Location: 88270 - 89487 (+)
Type: TC
Location: 88270 - 89487 (+)
Gene ID: HRGMv2_0621_3_80
Type: CAZyme
Location: 89484 - 90569 (+)
Type: CAZyme
Location: 89484 - 90569 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter aliiformigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0621_3_78 | vegetarian > vegan | 1.75983 | 0.04112 |